View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_8 (Length: 458)
Name: NF3049_low_8
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 26325244 - 26324814
Alignment:
| Q |
11 |
catcatcatcattaaatttaaacgttgcatcttcaatacttggattgttttttctgtttgccatggtggaagcaaaacttt-gagaaaaattgtttatgg |
109 |
Q |
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| T |
26325244 |
catcatcatcatcaaatttaaacgttgcaccttcaatacttggattgttttttctgtttgccatggtggaagcaaaacttttgagaaaaattgtttatgg |
26325145 |
T |
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| Q |
110 |
aatgatggtgatggcagtagcggcgctaaataaaagcgtcgctgccgccagaaataaaagttggataaaaaccgtttgatgaaacaaaaagagaatgaaa |
209 |
Q |
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| T |
26325144 |
aatgatggtgatggcagtagcggcgctaaataaaagcgtcgctgccgccagaaatgaaagttggataaaaaccgtttgatgaaacaaaaagagaatgaaa |
26325045 |
T |
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| Q |
210 |
gaatttgatgaatgagatggaaattattatatatatgtcaaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtttgt |
309 |
Q |
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| T |
26325044 |
gaatttgatgaatgagatggaaattattatatatatgtcaaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtttgt |
26324945 |
T |
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| Q |
310 |
ttattttgaaacgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaaatttattatcagttgattaccgttagatactat |
409 |
Q |
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| T |
26324944 |
ttattttgaaacgtggttattttttatttgggatttgcaaataaaaccaagaaacacgacttttcaaatttattatcagttgattaccgttagatactat |
26324845 |
T |
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| Q |
410 |
tgtggtcatattgtttgattggatgcatgca |
440 |
Q |
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| T |
26324844 |
tgtggtcatattgttttattggatgcatgca |
26324814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 249 - 306
Target Start/End: Original strand, 48320850 - 48320906
Alignment:
| Q |
249 |
aaagaggtgcaattgacggttaattaccgttggaaaattgcatgaagtcgtttcagtt |
306 |
Q |
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| T |
48320850 |
aaagaggtgcaattggcggttaattaccgtttgaaaa-tgcatgaagtcgtttcagtt |
48320906 |
T |
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