View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_high_17 (Length: 250)
Name: NF3050_high_17
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1030178 - 1030383
Alignment:
| Q |
1 |
aaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatgga-agaccaaaactgacaacttttaaacataaagagattaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| || |
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| T |
1030178 |
aaaagtatcgtatgaaaatccttgtgaaacaaacatttaccacggtttaaattacgatggatagaccaaaactaacaa-ttttaaacataaagagatcaa |
1030276 |
T |
|
| Q |
100 |
gtccgcaaaatgnnnnnnncagggtatcgaaactacaattaaacacttaaaattccat--nnnnnnnngtacttttgttaattcacaaaaatattgttcc |
197 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1030277 |
gtccgcaaaatgaaaaaaaca-ggtatcgaaactacaattaaacacttaaaattccataaaaaaaaaagtacttttgttaattcacaaaaatattgttcc |
1030375 |
T |
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| Q |
198 |
attttaac |
205 |
Q |
| |
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|||||||| |
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| T |
1030376 |
attttaac |
1030383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 1031010 - 1031051
Alignment:
| Q |
198 |
attttaaccaccatttacaattttgataatatattttcctat |
239 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1031010 |
attttaaccaccgtttacaattttgataatatattttcctat |
1031051 |
T |
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