View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3050_high_18 (Length: 247)

Name: NF3050_high_18
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3050_high_18
NF3050_high_18
[»] chr8 (17 HSPs)
chr8 (18-187)||(33826122-33826291)
chr8 (187-232)||(33826391-33826436)
chr8 (123-187)||(886495-886559)
chr8 (129-187)||(12653689-12653747)
chr8 (49-111)||(32231847-32231909)
chr8 (61-106)||(20244716-20244761)
chr8 (61-106)||(20248400-20248445)
chr8 (123-187)||(8418349-8418413)
chr8 (145-187)||(27868372-27868414)
chr8 (129-187)||(32967324-32967382)
chr8 (129-187)||(38252485-38252543)
chr8 (36-187)||(2195373-2195528)
chr8 (123-187)||(2797036-2797100)
chr8 (43-111)||(5391960-5392028)
chr8 (123-187)||(14748753-14748817)
chr8 (43-111)||(17790224-17790292)
chr8 (71-111)||(32241551-32241591)
[»] chr7 (14 HSPs)
chr7 (123-187)||(34064211-34064275)
chr7 (133-187)||(3667924-3667978)
chr7 (129-187)||(28333173-28333231)
chr7 (36-187)||(37496444-37496599)
chr7 (61-106)||(44341041-44341086)
chr7 (123-187)||(5068345-5068409)
chr7 (49-108)||(9658756-9658815)
chr7 (123-187)||(10355782-10355846)
chr7 (123-175)||(14648978-14649030)
chr7 (52-110)||(25778657-25778716)
chr7 (129-187)||(30463018-30463076)
chr7 (49-111)||(33774168-33774230)
chr7 (129-187)||(34963858-34963916)
chr7 (123-187)||(2849251-2849315)
[»] chr5 (15 HSPs)
chr5 (129-187)||(20189894-20189952)
chr5 (49-187)||(34534842-34534982)
chr5 (149-187)||(22398301-22398339)
chr5 (145-187)||(25344786-25344828)
chr5 (82-187)||(15898143-15898251)
chr5 (123-187)||(19889581-19889645)
chr5 (123-187)||(39183675-39183739)
chr5 (73-111)||(4044604-4044642)
chr5 (77-111)||(9426681-9426715)
chr5 (77-111)||(13597975-13598009)
chr5 (73-111)||(20369217-20369255)
chr5 (123-173)||(35585678-35585728)
chr5 (129-174)||(3725188-3725233)
chr5 (50-111)||(19889887-19889948)
chr5 (55-111)||(72233-72289)
[»] chr4 (21 HSPs)
chr4 (123-187)||(55360395-55360459)
chr4 (60-111)||(388547-388598)
chr4 (145-187)||(29644373-29644415)
chr4 (77-111)||(51572354-51572388)
chr4 (49-108)||(13529780-13529839)
chr4 (123-187)||(22872435-22872499)
chr4 (36-111)||(20964421-20964496)
chr4 (36-111)||(33047403-33047478)
chr4 (124-187)||(49448838-49448901)
chr4 (129-187)||(1825295-1825353)
chr4 (129-187)||(3686013-3686071)
chr4 (129-175)||(26799275-26799321)
chr4 (129-187)||(38976993-38977051)
chr4 (129-187)||(39052948-39053006)
chr4 (77-111)||(39979726-39979760)
chr4 (129-187)||(39979782-39979840)
chr4 (123-187)||(9052097-9052161)
chr4 (49-108)||(21954833-21954893)
chr4 (123-187)||(22020557-22020621)
chr4 (129-173)||(37309700-37309744)
chr4 (123-187)||(38319907-38319971)
[»] chr1 (8 HSPs)
chr1 (43-173)||(27698724-27698858)
chr1 (123-187)||(52382434-52382498)
chr1 (36-111)||(24131528-24131603)
chr1 (124-187)||(25842596-25842659)
chr1 (145-187)||(34813935-34813977)
chr1 (129-187)||(48242638-48242696)
chr1 (75-111)||(6784947-6784983)
chr1 (123-187)||(29225749-29225813)
[»] scaffold0221 (1 HSPs)
scaffold0221 (129-187)||(8889-8947)
[»] chr2 (10 HSPs)
chr2 (77-111)||(8385022-8385056)
chr2 (123-187)||(44424310-44424374)
chr2 (131-186)||(3487398-3487453)
chr2 (36-111)||(7213380-7213455)
chr2 (129-184)||(28108425-28108480)
chr2 (73-180)||(31592493-31592603)
chr2 (129-187)||(41436081-41436139)
chr2 (129-187)||(43077773-43077831)
chr2 (129-173)||(13375251-13375295)
chr2 (123-187)||(16864981-16865045)
[»] scaffold0685 (1 HSPs)
scaffold0685 (123-187)||(6447-6511)
[»] scaffold0262 (1 HSPs)
scaffold0262 (129-187)||(12483-12541)
[»] scaffold0058 (1 HSPs)
scaffold0058 (129-187)||(14458-14516)
[»] chr6 (4 HSPs)
chr6 (129-187)||(7301127-7301185)
chr6 (130-187)||(7739565-7739622)
chr6 (123-187)||(33017991-33018055)
chr6 (129-173)||(33109375-33109419)
[»] chr3 (10 HSPs)
chr3 (129-187)||(32023148-32023206)
chr3 (49-110)||(3862299-3862360)
chr3 (49-106)||(29809695-29809752)
chr3 (34-111)||(30261629-30261706)
chr3 (49-109)||(42547235-42547296)
chr3 (123-187)||(39329797-39329861)
chr3 (123-187)||(41287258-41287322)
chr3 (129-189)||(45392092-45392152)
chr3 (36-88)||(47684708-47684760)
chr3 (123-187)||(52325173-52325237)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 33826122 - 33826291
Alignment:
Q  18 aatcagtactcgtcccctgtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaann 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||      
T  33826122 aatcagtactcgtcccccgtcccaaaatatttgagtcatttacaaaaaagatttatcctaaaataattgacttatttcacttttcaatacaatattaatt 33826221  T
Q  118 nnnnncaattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
         ||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||    
T  33826222 tttttcaattataactctaatcaatactactttcatcattctcaattcaatatattctgctttacattta 33826291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Original strand, 33826391 - 33826436
Alignment:
Q  187 acggatggagtaatgttaatgtatcaaacgtttcttaccttctgtg 232  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||    
T  33826391 acggagggagtaatattaatgtatcaaacgtttcttaccttctgtg 33826436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 886559 - 886495
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||| ||||| || |||||||| |||||||||||||||||||||||| |||| ||||||    
T  886559 caattataacactaattaatattacttttatcattctcaattcgatatattctactttgcattta 886495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 12653689 - 12653747
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||| || || ||||||||||||||||||||||| ||||||||  |||||||||||    
T  12653689 taactctgattaatattactttcatcattctcaattcaatatattccactttacattta 12653747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 32231909 - 32231847
Alignment:
Q  49 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||||| ||||||   || |||||||| |||||||| |||||||||||||||||||||    
T  32231909 tgagtcatttataaaaaaatattgtcccaaaaaaattgactcatttcacttttcaatacaata 32231847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 20244716 - 20244761
Alignment:
Q  61 aaaaaagatttatcccaaaataattgacttatttcacttttcaata 106  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  20244716 aaaaaatatttgtcccaaaataattgacatatttcacttttcaata 20244761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 20248445 - 20248400
Alignment:
Q  61 aaaaaagatttatcccaaaataattgacttatttcacttttcaata 106  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  20248445 aaaaaatatttgtcccaaaataattgacatatttcacttttcaata 20248400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 8418413 - 8418349
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || | ||||||||||| |||||||||  |||||||| |||||||||||    
T  8418413 caattataactctaattaatactactttcatcactctcaattcagtatattctactttacattta 8418349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 27868414 - 27868372
Alignment:
Q  145 tactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||    
T  27868414 tactttcatcattctcaattcaatatattctactttgcattta 27868372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 32967382 - 32967324
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || | ||||||||||||||||||||| ||||||||  ||||| |||||    
T  32967382 taactctaattaatactactttcatcattctcaattcaatatattccactttaaattta 32967324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 38252543 - 38252485
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||||||| | |||||||||||||  |||||| ||||||||  |||||||||||    
T  38252543 taactctaatcaatactactttcatcatttccaattcaatatattccactttacattta 38252485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 187
Target Start/End: Original strand, 2195373 - 2195528
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn----caattctaa 131  Q
    |||||| ||||  |||||||||| |||||||   || |||||||| |||||||  ||||||||||||||||||| | |||           ||||| |||    
T  2195373 gtcccataataactgagtcatttgcaaaaaaatgttgtcccaaaaaaattgacccatttcacttttcaatacaacaataattacttttttccaattataa 2195472  T
Q  132 ctctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||| || | ||||||||||| || |||||| ||||||||| |||| ||||||    
T  2195473 ctctaattaatactactttcatcactcccaattcaatatattctactttgcattta 2195528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 2797036 - 2797100
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || ||||||||||| | || |||||| ||||||||| |||| ||||||    
T  2797036 caattataactctaattaatattactttcattactcccaattcaatatattctactttgcattta 2797100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 5391960 - 5392028
Alignment:
Q  43 aatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||||||| ||||| ||||||| |  | || |||||||| ||| | |||||||||||||||||||||    
T  5391960 aatatttgagccatttgcaaaaaaaaagtgtctcaaaataactgagtcatttcacttttcaatacaata 5392028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 14748817 - 14748753
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||| ||||| || | |||||||| |||||||||||| ||||||||| |||| ||||||    
T  14748817 caattataacactaattaatactactttcaccattctcaattcaatatattctactttgcattta 14748753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 17790292 - 17790224
Alignment:
Q  43 aatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||| ||||| ||||| |||||||   || ||||| || |||| |||||||||||||||||||||||||    
T  17790292 aataattgagccatttgcaaaaaaatattgtcccagaaaaatttacttatttcacttttcaatacaata 17790224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 32241591 - 32241551
Alignment:
Q  71 tatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  32241591 tatcctaaaataaatgagttatttcacttttcaatacaata 32241551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 34064211 - 34064275
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||||| |||||||||||    
T  34064211 caattataactctaattaatattactttcatcactctcaattcaatatattctactttacattta 34064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 3667978 - 3667924
Alignment:
Q  133 tctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||| || ||||||||||||| ||||||||| ||||||||| |||||||||||    
T  3667978 tctaattaatattactttcatcactctcaattcaatatattctactttacattta 3667924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 28333173 - 28333231
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||| || |||||| ||||||||| |||||||||||    
T  28333173 taactctaattaatattactttcatcactcccaattcaatatattctactttacattta 28333231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 37496599 - 37496444
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn----caattctaa 131  Q
    |||||| ||||  |||||||||| |||||||   ||||||||||| |||||||  |||||||||||||| |||| | |||           ||||| |||    
T  37496599 gtcccataataactgagtcatttgcaaaaaaatattatcccaaaaaaattgacccatttcacttttcaacacaacattaattacttttttccaattataa 37496500  T
Q  132 ctctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    || |||| || | ||||||||||| ||||||||| ||||||||| |||||||||||    
T  37496499 ctttaattaatactactttcatcactctcaattcaatatattctactttacattta 37496444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 44341041 - 44341086
Alignment:
Q  61 aaaaaagatttatcccaaaataattgacttatttcacttttcaata 106  Q
    |||||| |||| |||||||||||||||| |||||||||||||||||    
T  44341041 aaaaaatatttgtcccaaaataattgacatatttcacttttcaata 44341086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 5068409 - 5068345
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || |||||||||| || ||| ||||| ||||||||| |||||||||||    
T  5068409 caattataactctaattaatattactttcaccactcttaattcaatatattctactttacattta 5068345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 9658756 - 9658815
Alignment:
Q  49 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaataca 108  Q
    |||||||||| ||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  9658756 tgagtcatttgcaaaaaaaatattatcctaaaa-aattgacttatttcacttttcaataca 9658815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 10355846 - 10355782
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || |||||||| | |||||||||||| ||||||||| |||| ||||||    
T  10355846 caattataactctaattaatattacttttaccattctcaattcaatatattctactttgcattta 10355782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 14649030 - 14648978
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattct 175  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| |||||||||    
T  14649030 caattataactctaattaatattactttcatcactctcaattcaatatattct 14648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 25778657 - 25778716
Alignment:
Q  52 gtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaatacaat 110  Q
    ||||||| ||||||| || || || ||||| |||||||||||||||||||||||||||||    
T  25778657 gtcattttcaaaaaaaatattgtctcaaaaaaattgacttatttcacttttcaatacaat 25778716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 30463018 - 30463076
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||||| ||||||| ||||||||   ||||||||||    
T  30463018 taactctaattaatattactttcatcattttcaattcaatatattccattttacattta 30463076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 33774230 - 33774168
Alignment:
Q  49 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||||||||||||||| |  | | ||||||||| ||| | |||||||||||||||||||||    
T  33774230 tgagtcatttacaaaaaaaaagtgttccaaaataactgagtcatttcacttttcaatacaata 33774168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 34963916 - 34963858
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||||||||||||  |||||||   |||||||||||    
T  34963916 taactctaattaatattactttcatcattctcaattaaatatatttcactttacattta 34963858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 2849251 - 2849315
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| ||| |||||| || | |||||||| || ||||||||| ||||||||| |||||||||||    
T  2849251 caattataattctaattaatactactttcaccactctcaattcaatatattctactttacattta 2849315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 20189894 - 20189952
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||  |||||||||||    
T  20189894 taactctaattaatattactttcatcattctcaattcaatatattccactttacattta 20189952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 34534842 - 34534982
Alignment:
Q  49 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn--caattctaactctaatcaagatta 146  Q
    |||| |||||||||||||   || |||||||| |||||| | | ||||||||||||||||||| |||         ||||| |||||||||| || ||||    
T  34534842 tgagccatttacaaaaaaatattgtcccaaaaaaattgattcagttcacttttcaatacaatattaattattttttcaattataactctaattaatatta 34534941  T
Q  147 ctttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||| |||||||||||||| ||||||| | ||||| |||||    
T  34534942 cttttatcattctcaattcaatatattatactttatattta 34534982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 22398301 - 22398339
Alignment:
Q  149 ttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  22398301 ttcatcattctcaattcaatatattctgctttacattta 22398339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 25344828 - 25344786
Alignment:
Q  145 tactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  25344828 tactttcatcattctcaattcaatatattctactttacattta 25344786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 187
Target Start/End: Original strand, 15898143 - 15898251
Alignment:
Q  82 aattgacttatttcacttttcaatacaatagta---annnnnnncaattctaactctaatcaagattactttcatcattctcaattcgatatattctgct 178  Q
    |||||||||||||||||||||||||||||| ||   |       ||||| |||| ||||| || |||||||||| || ||||||||| ||||||||| ||    
T  15898143 aattgacttatttcacttttcaatacaatattaattacttttttcaattataacactaattaatattactttcaccactctcaattcaatatattctact 15898242  T
Q  179 ttacattta 187  Q
    || ||||||    
T  15898243 ttgcattta 15898251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 19889645 - 19889581
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || |||||||||| || | ||||||| ||||||||| |||||||||||    
T  19889645 caattataactctaattaatattactttcaccactttcaattcaatatattctactttacattta 19889581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 39183739 - 39183675
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  39183739 caattataactctaattaatattactttcatcactctcaattcaatatattccactttgcattta 39183675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 4044642 - 4044604
Alignment:
Q  73 tcccaaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||||||||| | |||||||||||||||||||||    
T  4044642 tcccaaaataattgaatcatttcacttttcaatacaata 4044604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 9426715 - 9426681
Alignment:
Q  77 aaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||||||| |||||||||||||||||||||    
T  9426715 aaaataattgactcatttcacttttcaatacaata 9426681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 13597975 - 13598009
Alignment:
Q  77 aaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||||||| |||||||||||||||||||||    
T  13597975 aaaataattgactcatttcacttttcaatacaata 13598009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 20369217 - 20369255
Alignment:
Q  73 tcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  20369217 tcccaaaaaaattgactcatttcacttttcaatacaata 20369255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 35585728 - 35585678
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatatt 173  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||| |||||||    
T  35585728 caattataactttaatcaatattactttcatcactctcaattcaatatatt 35585678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 3725188 - 3725233
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattc 174  Q
    |||||||||| || ||||||||||||| || |||||||||||||||    
T  3725188 taactctaattaatattactttcatcactcacaattcgatatattc 3725233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 19889948 - 19889887
Alignment:
Q  50 gagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||| ||||||||  || ||| |||| ||||||| ||||||||||| ||||||||||    
T  19889948 gagtcatttgcaaaaaagtattgtcctaaaaaaattgacctatttcactttccaatacaata 19889887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 72289 - 72233
Alignment:
Q  55 atttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||| ||||||||  || |||||||| |||||||  |||||||||||||||||||||    
T  72289 atttgcaaaaaagtattgtcccaaaaaaattgacccatttcacttttcaatacaata 72233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 55360459 - 55360395
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||| | |||||||||||    
T  55360459 caattataactctaattaatattactttcatcactctcaattcaatatattgtactttacattta 55360395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 388598 - 388547
Alignment:
Q  60 caaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||| | ||||||||| | ||||||||||||||||||||||||||||||    
T  388598 caaaaaaaaattatcccaacaaaattgacttatttcacttttcaatacaata 388547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 29644373 - 29644415
Alignment:
Q  145 tactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||||||||||||||| ||||||||| |||||||||||    
T  29644373 tactttcatcattctcaattcaatatattctactttacattta 29644415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 51572388 - 51572354
Alignment:
Q  77 aaaataattgacttatttcacttttcaatacaata 111  Q
    |||||||||||||||||||||||||||||||||||    
T  51572388 aaaataattgacttatttcacttttcaatacaata 51572354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 13529780 - 13529839
Alignment:
Q  49 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaataca 108  Q
    |||||||||| ||||||| || |||||| |||| |||||||||||||||||||||||||||    
T  13529780 tgagtcatttgcaaaaaaaatattatcctaaaa-aattgacttatttcacttttcaataca 13529839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 22872499 - 22872435
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  22872499 caattataactctaattaatattactttcatcactctcaattcaatatattccactttgcattta 22872435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 20964496 - 20964421
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||| ||||  |||||||||| |||||||   || ||||| || ||||||| ||||||||||||||||||||||    
T  20964496 gtcccataataactgagtcatttgcaaaaaaatattgtcccagaaaaattgacctatttcacttttcaatacaata 20964421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 33047403 - 33047478
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||| |||| ||||| ||||| ||||||| |  | ||||||||||| ||| | |||||||||||||||||||||    
T  33047403 gtcccataataattgagccatttgcaaaaaaaaagtgtcccaaaataactgagtcatttcacttttcaatacaata 33047478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 49448838 - 49448901
Alignment:
Q  124 aattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||| |||||||||| || | ||||||||||||||||||||| ||||||| | |||| ||||||    
T  49448838 aattataactctaattaatactactttcatcattctcaattcaatatattatactttgcattta 49448901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 1825353 - 1825295
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || |||| |||||||||| ||||||| ||||||||  |||||||||||    
T  1825353 taactctaattaatattattttcatcattttcaattcaatatattccactttacattta 1825295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 3686013 - 3686071
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  3686013 taactctaattaatattactttcatcactctcaattcaatatattcaactttgcattta 3686071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 26799321 - 26799275
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattct 175  Q
    |||||||||| || | ||||||||||||||||||||| |||||||||    
T  26799321 taactctaattaatagtactttcatcattctcaattcaatatattct 26799275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 38976993 - 38977051
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || | ||||||||||||| ||||||| ||||||||  |||||||||||    
T  38976993 taactctaattaatactactttcatcattttcaattcaatatattccactttacattta 38977051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 39053006 - 39052948
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || | |||||||| || ||||||||| ||||||||| |||||||||||    
T  39053006 taactctaattaatactactttcaccactctcaattcaatatattctactttacattta 39052948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 39979726 - 39979760
Alignment:
Q  77 aaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||||| |||||||||||||||||||||||    
T  39979726 aaaataattgagttatttcacttttcaatacaata 39979760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 39979782 - 39979840
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || |||||||||||||||  |||||| ||||||||  |||||||||||    
T  39979782 taactctaattaatattactttcatcatttccaattcaatatattccactttacattta 39979840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 9052161 - 9052097
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||| ||||| || | ||||||||||||||| ||||| ||||||||| ||| |||||||    
T  9052161 caattataacactaattaatactactttcatcattctgaattcaatatattctacttaacattta 9052097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 21954893 - 21954833
Alignment:
Q  49 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaataca 108  Q
    |||||||||| ||||||| || || |||||||| |||||||  ||||||||||||||||||    
T  21954893 tgagtcatttgcaaaaaaaatattgtcccaaaaaaattgaccaatttcacttttcaataca 21954833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 22020621 - 22020557
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| |  | |||||||| |||||||||||| ||||||||| |||| ||||||    
T  22020621 caattataactctaattattactactttcaccattctcaattcaatatattctactttgcattta 22020557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 37309700 - 37309744
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatatt 173  Q
    |||||||||| || ||||||||||||| ||||||||| |||||||    
T  37309700 taactctaattaatattactttcatcactctcaattcaatatatt 37309744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 38319907 - 38319971
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||| ||||| || | ||||||||||| ||||||||| ||||||||| |||| ||||||    
T  38319907 caattataacactaattaatactactttcatcactctcaattcaatatattctactttgcattta 38319971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 173
Target Start/End: Original strand, 27698724 - 27698858
Alignment:
Q  43 aatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaatagtaannnnnnn----caattctaactctaat 138  Q
    |||| ||||||||||||||||||| |  | ||| ||||||||||| | ||||||||||||||||||||| |||           |  || ||||||||||    
T  27698724 aataattgagtcatttacaaaaaaaaagtgtcctaaaataattgagtcatttcacttttcaatacaatattaattacttttttccctttataactctaat 27698823  T
Q  139 caagattactttcatcattctcaattcgatatatt 173  Q
     || ||||||||||||||||||||||| |||||||    
T  27698824 taatattactttcatcattctcaattcaatatatt 27698858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 52382498 - 52382434
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || |||||||||| || ||||||||| ||||||| | |||||||||||    
T  52382498 caattataactctaattaatattactttcaccactctcaattcaatatattttactttacattta 52382434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 24131603 - 24131528
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||| ||||  ||||||||||  |||||| || | ||||| || |||||||||||||||||||||||| |||||    
T  24131603 gtcccataataactgagtcatttgtaaaaaaaatatgtcccagaaaaattgacttatttcacttttcaatgcaata 24131528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 25842596 - 25842659
Alignment:
Q  124 aattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||| ||||| |||| || | ||||||||||||||||||| | ||||||||| |||||||||||    
T  25842596 aattataactataattaacactactttcatcattctcaatgcaatatattctactttacattta 25842659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 34813935 - 34813977
Alignment:
Q  145 tactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||    
T  34813935 tactttcatcattctcaattcaatatattctactttgcattta 34813977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 48242696 - 48242638
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||| || |||||||| |||||||||||||| ||||||||  |||||||||||    
T  48242696 taactttaattaatattacttttatcattctcaattcaatatattccactttacattta 48242638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 6784947 - 6784983
Alignment:
Q  75 ccaaaataattgacttatttcacttttcaatacaata 111  Q
    ||||||||||||| | |||||||||||||||||||||    
T  6784947 ccaaaataattgaatcatttcacttttcaatacaata 6784983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 29225749 - 29225813
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || | ||||||||||| || |||||| ||||||||| |||| ||||||    
T  29225749 caattataactctaattaatactactttcatcactcccaattcaatatattctactttgcattta 29225813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 8889 - 8947
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||||||||||||| ||||||||  |||| ||||||    
T  8889 taactctaattaatattactttcatcattctcaattcaatatattccactttgcattta 8947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 8385022 - 8385056
Alignment:
Q  77 aaaataattgacttatttcacttttcaatacaata 111  Q
    |||||||||||||||||||||||||||||||||||    
T  8385022 aaaataattgacttatttcacttttcaatacaata 8385056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 44424374 - 44424310
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || | ||||||||||||||||||||| ||||||||  |||| ||||||    
T  44424374 caattataactctaattaatactactttcatcattctcaattcaatatattcaactttgcattta 44424310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 3487398 - 3487453
Alignment:
Q  131 actctaatcaagattactttcatcattctcaattcgatatattctgctttacattt 186  Q
    |||||||| || ||||||||||||| ||||||||| ||||||||| |||| |||||    
T  3487398 actctaattaatattactttcatcactctcaattcaatatattctactttgcattt 3487453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 7213380 - 7213455
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||| ||||  |||||||||| ||||||| |  | ||||||||||||| | | |||||||||||||||||||||    
T  7213380 gtcccataataagtgagtcatttgcaaaaaataagtgtcccaaaataattaaatcatttcacttttcaatacaata 7213455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 28108480 - 28108425
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacat 184  Q
    |||||||||| || | ||||||||||||||||||||| ||||||||  ||||||||    
T  28108480 taactctaattaatactactttcatcattctcaattcaatatattccactttacat 28108425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 31592493 - 31592603
Alignment:
Q  73 tcccaaaataattgacttatttcacttttcaatacaatagta---annnnnnncaattctaactctaatcaagattactttcatcattctcaattcgata 169  Q
    |||||||| |||||||| ||||||||||||||||||||| ||   |       ||||| ||||| |||| || |||| |||||||| ||||||||| |||    
T  31592493 tcccaaaaaaattgactcatttcacttttcaatacaataataattactttttccaattataactttaattaatattattttcatcactctcaattcaata 31592592  T
Q  170 tattctgcttt 180  Q
    |||||| ||||    
T  31592593 tattctacttt 31592603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 41436081 - 41436139
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || | ||||||||||||||||||||| ||||||||  |||| ||||||    
T  41436081 taactctaattaatactactttcatcattctcaattcaatatattccactttgcattta 41436139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 43077831 - 43077773
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||||| ||||||| |||||||   |||||||||||    
T  43077831 taactctaattaatattactttcatcattttcaattcaatatatttcactttacattta 43077773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 13375295 - 13375251
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatatt 173  Q
    |||||||||| || |||| |||||||||||||||||| |||||||    
T  13375295 taactctaattaatattattttcatcattctcaattcaatatatt 13375251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 16865045 - 16864981
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || || ||||||||||||| |||||| |||||||   |||||||||||    
T  16865045 caattataactctaattaatatcactttcatcattcacaattcaatatatttcactttacattta 16864981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0685 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0685
Description:

Target: scaffold0685; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 6511 - 6447
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || |||||||||| || ||||||||| ||||||| | |||||||||||    
T  6511 caattataactctaattaatattactttcaccactctcaattcaatatattttactttacattta 6447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 12541 - 12483
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || | |||||||| |||||| ||||| ||||||||| |||||||||||    
T  12541 taactctaattaatactactttcaccattcttaattcaatatattctactttacattta 12483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 14458 - 14516
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || | ||||||||||||| ||||||| ||||||||  |||||||||||    
T  14458 taactctaattaatactactttcatcattttcaattcaatatattccactttacattta 14516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 7301185 - 7301127
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||  || ||||||||||||||| ||||||| ||||||||  |||||||||||    
T  7301185 taactctaactaatattactttcatcattttcaattcaatatattccactttacattta 7301127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 7739622 - 7739565
Alignment:
Q  130 aactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||||||| || | |||||| |||||||||||||| |||| |||| |||||||||||    
T  7739622 aactctaattaatactacttttatcattctcaattcaatatcttctactttacattta 7739565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 33018055 - 33017991
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || | |||||||| || || |||||| ||||||||| |||||||||||    
T  33018055 caattataactctaattaatactactttcaccactcccaattcaatatattctactttacattta 33017991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 33109375 - 33109419
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatatt 173  Q
    |||||||||| || | ||||||||||||||||||||| |||||||    
T  33109375 taactctaattaatactactttcatcattctcaattcaatatatt 33109419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 32023206 - 32023148
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    |||||||||| || ||||||||||||| ||||||||| ||||||||  |||| ||||||    
T  32023206 taactctaattaatattactttcatcactctcaattcaatatattcaactttgcattta 32023148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 3862360 - 3862299
Alignment:
Q  49 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaat 110  Q
    |||||||||| ||||||| | ||||   ||||||||| ||| ||||||||||||||||||||    
T  3862360 tgagtcatttgcaaaaaaaaattattttaaaataattaactcatttcacttttcaatacaat 3862299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 106
Target Start/End: Complemental strand, 29809752 - 29809695
Alignment:
Q  49 tgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaata 106  Q
    ||||||||||  |||||| | |||||  ||||||||||| ||||||||||||||||||    
T  29809752 tgagtcatttgtaaaaaataattatcataaaataattgatttatttcacttttcaata 29809695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 30261706 - 30261629
Alignment:
Q  34 ctgtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgacttatttcacttttcaatacaata 111  Q
    |||||||| ||||  |||| ||||| |||||||   || |||||||| |||||||  |||||||||||||||||||||    
T  30261706 ctgtcccataataactgagccatttgcaaaaaaatattgtcccaaaaaaattgacccatttcacttttcaatacaata 30261629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 42547296 - 42547235
Alignment:
Q  49 tgagtcatttacaaaaaagat-ttatcccaaaataattgacttatttcacttttcaatacaa 109  Q
    |||||||| | ||||||| || || |||||||| |||||||| |||||||||||||||||||    
T  42547296 tgagtcatctgcaaaaaaaatattgtcccaaaaaaattgactcatttcacttttcaatacaa 42547235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 39329861 - 39329797
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| ||| |||||| || | ||||||||||| ||||||||| ||||||||| |||| ||||||    
T  39329861 caattataattctaattaatactactttcatcactctcaattcaatatattctactttgcattta 39329797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 41287258 - 41287322
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || |||| |||||  | ||||||||| ||||||||| |||||||||||    
T  41287258 caattataactctaattaatattaatttcacaactctcaattcaatatattctactttacattta 41287322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 45392092 - 45392152
Alignment:
Q  129 taactctaatcaagattactttcatcattctcaattcgatatattctgctttacatttacg 189  Q
    |||||||||| || |||||||||||||||  |||||| |||||||   |||||||||||||    
T  45392092 taactctaattaatattactttcatcatttccaattcaatatatttcactttacatttacg 45392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 47684708 - 47684760
Alignment:
Q  36 gtcccaaaatatttgagtcatttacaaaaaagatttatcccaaaataattgac 88  Q
    |||||||||||  |||| ||||||||||||| | || ||||||||||||||||    
T  47684708 gtcccaaaataactgagccatttacaaaaaaaaattgtcccaaaataattgac 47684760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Original strand, 52325173 - 52325237
Alignment:
Q  123 caattctaactctaatcaagattactttcatcattctcaattcgatatattctgctttacattta 187  Q
    ||||| |||||||||| || | ||||||| ||||||||||||| ||||||||  |||| ||||||    
T  52325173 caattataactctaattaatactactttcgtcattctcaattcaatatattccactttgcattta 52325237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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