View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3050_high_21 (Length: 213)

Name: NF3050_high_21
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3050_high_21
NF3050_high_21
[»] chr2 (3 HSPs)
chr2 (110-182)||(28122437-28122509)
chr2 (16-64)||(28128970-28129018)
chr2 (106-139)||(28177144-28177177)
[»] chr5 (1 HSPs)
chr5 (112-185)||(34816312-34816385)
[»] scaffold0320 (1 HSPs)
scaffold0320 (110-151)||(17629-17670)


Alignment Details
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 28122509 - 28122437
Alignment:
Q  110 caatattctaattgaaccattgatcaagtttttgattcccctgtagcttcttggtcttatggatacagcttga 182  Q
    |||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||| |||| |||| |||||    
T  28122509 caatatcctaagtgaaccattgatcaagtttttgactcccctatagcttcttggtctaatggctacaacttga 28122437  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 28129018 - 28128970
Alignment:
Q  16 accaacgtgtgtgacgtagaggctgaaacaaatgactttacattgtaac 64  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28129018 accaacgtgtgtgacgaagaggctgaaacaaatgactttacattgtaac 28128970  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 28177177 - 28177144
Alignment:
Q  106 caaccaatattctaattgaaccattgatcaagtt 139  Q
    |||||||||| |||||||||||||||||||||||    
T  28177177 caaccaatatcctaattgaaccattgatcaagtt 28177144  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 185
Target Start/End: Complemental strand, 34816385 - 34816312
Alignment:
Q  112 atattctaattgaaccattgatcaagtttttgattcccctgtagcttcttggtcttatggatacagcttgattt 185  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| ||  ||||| |||||| |||||||||||||    
T  34816385 atatcctaattgaactattgatcaagtttttgactcccctgtatctgattggtattatggctacagcttgattt 34816312  T

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Target: scaffold0320 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 17670 - 17629
Alignment:
Q  110 caatattctaattgaaccattgatcaagtttttgattcccct 151  Q
    |||||| |||| ||||||||||||||||||||||| ||||||    
T  17670 caatatcctaagtgaaccattgatcaagtttttgactcccct 17629  T

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