View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_high_3 (Length: 462)
Name: NF3050_high_3
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 34311821 - 34311391
Alignment:
| Q |
1 |
agagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatggtacgagtaacat |
100 |
Q |
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| T |
34311821 |
agagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaataaccaacaagaataagcaagagaaatggtacgagtaacat |
34311722 |
T |
|
| Q |
101 |
gttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatgnnnnnnnnna-----aaattgctggtat |
195 |
Q |
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| T |
34311721 |
gttgagttgttctagcctcatgttgtgttgcttagggaagaaaatgatggagtatattttgtggtattgatgtttttttttttttttaagttgctggtat |
34311622 |
T |
|
| Q |
196 |
gttatatttataggttgtaaaaagctacatgcatggttcttgaagattc-tataaatgacatatggatggtaaagagtgaaatgggagtgacataatcgt |
294 |
Q |
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| T |
34311621 |
gttatatttataggttgtaaaaagttgcatgcatggttcttgaagattcatataaatgacatatggatggtaaagagtgaaatgggagtgacataatcgt |
34311522 |
T |
|
| Q |
295 |
agatagattgagaatgttcgagattagtatggtgttttggagaagagaatggtggttggttctaagtgcatgaattctccaagctcttccagaggcttcg |
394 |
Q |
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| T |
34311521 |
agatagattgagaatgttcgagattagtatggtgttttggagaagagaatggtggttggttctaagtgcaagaattctccaagctcttccagaggcttcg |
34311422 |
T |
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| Q |
395 |
tgtgttataagaaagagcaatgatacattga |
425 |
Q |
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| T |
34311421 |
tgtgttataagaatgagcaatgatacattga |
34311391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 195 - 404
Target Start/End: Original strand, 34323390 - 34323597
Alignment:
| Q |
195 |
tgttatatttataggttgtaaaaagctacatgcatggttcttgaagattctataaatgacatatggatggtaaagagtgaaatgggagtgacataatcgt |
294 |
Q |
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| T |
34323390 |
tgttgtatttataggtt-taaaatgttgcatgcataattcttgaagattctataaatgacatatggatggtagagagtgaaatggaagtgacataattgt |
34323488 |
T |
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| Q |
295 |
agatagattgagaatgttcgagattagtatggtgttttggagaagagaatggtggttggttctaagtgcatgaattctccaagctcttccagaggcttcg |
394 |
Q |
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| T |
34323489 |
cgatagatt-agaatgttctggattattatagtgttttggagaaaggaaaggtggttggttctaagtgcaagaattctccaagctcttccagagacttcg |
34323587 |
T |
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| Q |
395 |
tgtgttataa |
404 |
Q |
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|||||||||| |
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| T |
34323588 |
tgtgttataa |
34323597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 34323150 - 34323273
Alignment:
| Q |
1 |
agagagtgttgggagaatctatgaatggtaatagtgacccttttgcattagaaggaaaattaccaac---aagaataagcaagagaaatggtacgagtaa |
97 |
Q |
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|||| |||||||| ||||| |||||||||| | | ||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||| || | |
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| T |
34323150 |
agagtgtgttgggtgaatccatgaatggtagcaataacccttttgcattggaaggaaaattaccaacaagaagaataatcaagagaattggtataagcga |
34323249 |
T |
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| Q |
98 |
catgttgagttgttctagcctcat |
121 |
Q |
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| T |
34323250 |
catgttgagttgttgtagcctcat |
34323273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 34314242 - 34314160
Alignment:
| Q |
39 |
ccttttgcattagaaggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
121 |
Q |
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| T |
34314242 |
ccttttgctttggtaggaaaaccaccagtaagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34314160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 34305021 - 34305074
Alignment:
| Q |
68 |
aagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
121 |
Q |
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||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34305021 |
aagaacaagcaagaaaaatggtactagtaacatgttgagttgttgtagcctcat |
34305074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 34317511 - 34317578
Alignment:
| Q |
54 |
ggaaaattaccaacaagaataagcaagagaaatggtacgagtaacatgttgagttgttctagcctcat |
121 |
Q |
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| T |
34317511 |
ggaaaactaccagcaagaacaatcaagaaaaaaagtactagtaacatgttgagttgttgtagcctcat |
34317578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 33426045 - 33426001
Alignment:
| Q |
74 |
aagcaagagaaatggtacgagtaacatgttgagttgttctagcct |
118 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |||||| |
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| T |
33426045 |
aagcaagaaaaatggtactggtaacatgttgagttgttgtagcct |
33426001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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