View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_high_6 (Length: 351)
Name: NF3050_high_6
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 2874487 - 2874792
Alignment:
| Q |
17 |
aaaaataacttatcttcttcccactgatttgatgtcaacgttgatatcaaagtgtcaatctttctcaaatcaccttcaattcaataaatttttaaaccta |
116 |
Q |
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| T |
2874487 |
aaaaataacttatcttcttcacaataatttgatgtcaacgttgatattaaagtgtcaatctttctcaaatcaccttcaattcaataaatttttaaaccta |
2874586 |
T |
|
| Q |
117 |
ccatatcatatggtcggtcatcctgaaaaaccaatattaatttaacaagatttgcatatagtcttcaagtacctacaaggtaattaatagtactttctag |
216 |
Q |
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| T |
2874587 |
ccatatcatatggtcgggcatcctgaaaaaccaatattaatttaacaagatttgcatatagtcttcaa-----------gtaattaatagtactttctag |
2874675 |
T |
|
| Q |
217 |
atacccattttttctttgggttctctcagattagttcctttctttatccatacatactcaccataaggaacaccatagtttcttatgtagtaagtattag |
316 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2874676 |
atacccattttttctttgggtcctctcggattagttcctttctttatccatacatactcaccataaggaacaccatagtttcttatgtagcaagtattag |
2874775 |
T |
|
| Q |
317 |
gggtatggccttctgtg |
333 |
Q |
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|||||||||||| |||| |
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| T |
2874776 |
gggtatggccttttgtg |
2874792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 22286509 - 22286675
Alignment:
| Q |
30 |
cttcttcccactgatttgatgtcaacgttgatatcaaagtgtcaatctttctcaaatca-ccttcaattcaataaatttttaaacctaccatatcatatg |
128 |
Q |
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| T |
22286509 |
cttcttcacaatgatttgatgtcaatgttgatatcaaagtgtcaatatttctcaaatcatcttttaattcaataaagttttaatcatatcataccatatg |
22286608 |
T |
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| Q |
129 |
gtcggtcatcctgaa-aaaccaatattaatttaacaagatttgcatatagtcttcaagtacctacaa |
194 |
Q |
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| T |
22286609 |
gtcttgtatcttgaagaaatcaatcttaatttgataatatttgcatatggtcttcaagtacctacaa |
22286675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 328
Target Start/End: Complemental strand, 17865453 - 17865303
Alignment:
| Q |
177 |
gtcttcaagtacctacaaggtaattaatagtactttctagatacccattttttctttgggttctctcagattagttcctttctttatccatacatactca |
276 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| |||||||| | ||||||| || | ||| | |||||||||| ||| | | | ||| |
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| T |
17865453 |
gtcttcaaatacctacaaaataattaatagtactttctatgtacccattgtga-tttgggtccttgtgggttaatacctttctttacccaaataaattca |
17865355 |
T |
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| Q |
277 |
ccataaggaacaccatagtttcttatgtagtaagtattaggggtatggcctt |
328 |
Q |
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||||||||||||||| ||||||||||||| ||||||| || ||||| |||| |
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| T |
17865354 |
ccataaggaacaccaaagtttcttatgtaacaagtatttggagtatgccctt |
17865303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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