View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3050_high_9 (Length: 310)

Name: NF3050_high_9
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3050_high_9
NF3050_high_9
[»] chr3 (3 HSPs)
chr3 (18-224)||(42633040-42633247)
chr3 (18-97)||(32979563-32979648)
chr3 (22-68)||(11219963-11220010)
[»] chr1 (4 HSPs)
chr1 (18-224)||(25786726-25786933)
chr1 (22-130)||(26055659-26055774)
chr1 (18-130)||(50678696-50678812)
chr1 (59-123)||(1616476-1616541)
[»] scaffold0007 (1 HSPs)
scaffold0007 (18-224)||(145450-145656)
[»] chr8 (2 HSPs)
chr8 (18-224)||(38590571-38590780)
chr8 (59-130)||(45541971-45542043)
[»] scaffold1974 (1 HSPs)
scaffold1974 (18-130)||(159-278)
[»] scaffold1878 (1 HSPs)
scaffold1878 (18-130)||(996-1115)
[»] scaffold0290 (1 HSPs)
scaffold0290 (18-130)||(9071-9190)
[»] chr2 (4 HSPs)
chr2 (18-130)||(23178141-23178259)
chr2 (18-130)||(23589398-23589516)
chr2 (22-130)||(12853361-12853475)
chr2 (22-130)||(6707686-6707802)
[»] chr4 (1 HSPs)
chr4 (18-97)||(44303164-44303249)
[»] chr5 (2 HSPs)
chr5 (18-130)||(21388017-21388133)
chr5 (18-130)||(18694074-18694190)
[»] chr6 (1 HSPs)
chr6 (18-130)||(34083754-34083874)
[»] scaffold0051 (1 HSPs)
scaffold0051 (18-130)||(39422-39546)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 42633247 - 42633040
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcgcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42633247 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttcttgatgtgttgatgcgcta 42633148  T
Q  118 ttgatgatgattttgg-nnnnnnnnagnnnnnnnntcttggttttaattcttttgtaatcctataatcaaaagaagatgacaatacgtttaaggatttga 216  Q
    ||||||||||||||||         ||        |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42633147 ttgatgatgattttggtttttttttagaaaaaaaatcttggttttaattcttttgtaatcctataatcaaaagaagatgacaataggtttaaggatttga 42633048  T
Q  217 ttacatgg 224  Q
    ||||||||    
T  42633047 ttacatgg 42633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 32979648 - 32979563
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattc------atgatgatgaaaagaattaaaatgggttgaatatgattt 97  Q
    |||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||    
T  32979648 gttgatgtgctgaatttggagaaatccattgtttttaattcatgaagatgatgatgaaaagaattaaaatgggttgaatttgattt 32979563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 11220010 - 11219963
Alignment:
Q  22 atgtgctgaatttggagaaatcca-ttgtttttaattcatgatgatga 68  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  11220010 atgtgctgaatttggagaaatccatttttttttaattcatgatgatga 11219963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 25786726 - 25786933
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcgcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25786726 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcgcta 25786825  T
Q  118 ttgatgatgattttgg-nnnnnnnnagnnnnnnnntcttggttttaattcttttgtaatcctataatcaaaagaagatgacaatacgtttaaggatttga 216  Q
    ||||||||||||||||         ||        |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  25786826 ttgatgatgattttggtttttttttagaaaaaaaatcttggttttaattcttttgtaatcctataatcaaaagaagatgacaataggtttaagggtttga 25786925  T
Q  217 ttacatgg 224  Q
    ||||||||    
T  25786926 ttacatgg 25786933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 26055659 - 26055774
Alignment:
Q  22 atgtgctgaatttggagaaatccattgtttttaattcatga------tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc-g 114  Q
    |||||||||||||||||||||||||| ||||||||||||||      ||||||||||||| |||| ||||||||| |||||||| ||||||||| ||| |    
T  26055659 atgtgctgaatttggagaaatccattttttttaattcatgatgatgatgatgaaaagaatcaaaaagggttgaatttgatttcttgatgtgttgttgctg 26055758  T
Q  115 ctattgatgatgattt 130  Q
    ||||||||||||||||    
T  26055759 ctattgatgatgattt 26055774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 50678812 - 50678696
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatga---aaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc- 113  Q
    ||||||| |||||||||| |||||| |||| |||| |||| ||||||||||   |||||||||||| ||| |||| || |||| ||||||||||| | |     
T  50678812 gttgatgggctgaatttgaagaaatgcatttttttaaatttatgatgatgatgaaaagaattaaaaagggatgaaaataatttatcgatgtgttgtttct 50678713  T
Q  114 gctattgatgatgattt 130  Q
    |||| ||||||||||||    
T  50678712 gctactgatgatgattt 50678696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 1616541 - 1616476
Alignment:
Q  59 atgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc-gctattgatg 123  Q
    |||||||||||||||||| ||| ||||||||| |||||| | ||||||||| ||| ||||||||||    
T  1616541 atgatgatgaaaagaattcaaaagggttgaatttgattttttgatgtgttgttgctgctattgatg 1616476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 145450 - 145656
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcgcta 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  145450 gttgatgtgctgaatttggagaaatccattatttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcgcta 145549  T
Q  118 ttgatgatgattttggnnnnnnnnagnnnnnnnntcttggttttaattcttttgtaatcctataatcaaaagaagatgacaatacgtttaaggatttgat 217  Q
    |||||||||||||| |        ||        ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  145550 ttgatgatgatttttgttttttttagaaaaaaaatcttgtttttaattcttttgtaatcctataatcaaaagaagatgacaataggtttaaggatttaat 145649  T
Q  218 tacatgg 224  Q
    |||||||    
T  145650 tacatgg 145656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 38590571 - 38590780
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcgcta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38590571 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgcacta 38590670  T
Q  118 ttgatgatgattttgg---nnnnnnnnagnnnnnnnntcttggttttaattcttttgtaatcctataatcaaaagaagatgacaatacgtttaaggattt 214  Q
    |||||||||||||| |           ||        ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  38590671 ttgatgatgatttttgtttttttttttagaaaaaaaatcttggttttaattcttttgtaatcatataatcaaaagaagatgacaataggtttaaggattt 38590770  T
Q  215 gattacatgg 224  Q
    ||||||||||    
T  38590771 gattacatgg 38590780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 45542043 - 45541971
Alignment:
Q  59 atgatgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc-gctattgatgatgattt 130  Q
    ||||||||||||||||| ||||  |||||| | |||||||| ||||||||| ||| |||||||||||||||||    
T  45542043 atgatgatgaaaagaataaaaaatggttgattttgatttcttgatgtgttgttgctgctattgatgatgattt 45541971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 159 - 278
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgttttt-aattcatga------tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttga 110  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||      |||||||||||||||||| ||||||||| |||||||| |||||||||     
T  159 gttgatgtgctgaatttggagaaatctatttttttttaattcatgatgatgatgatgaaaagaattaaaaagggttgaatttgatttcttgatgtgttgt 258  T
Q  111 tgcgctattgatgatgattt 130  Q
    ||| ||||||||||||||||    
T  259 tgctctattgatgatgattt 278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 1115 - 996
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgttttt-aattcatgatgatga------aaagaattaaaatgggttgaatatgatttctcgatgtgttga 110  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||||||      |||||||||||| ||||||||| |||||||| |||||||||     
T  1115 gttgatgtgctgaatttggagaaatctatttttttttaattcatgatgatgatgatgaaaagaattaaaaagggttgaatttgatttcttgatgtgttgt 1016  T
Q  111 tgcgctattgatgatgattt 130  Q
    ||| ||||||||||||||||    
T  1015 tgctctattgatgatgattt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 9071 - 9190
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgttttt-aattcatga------tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttga 110  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||      |||||||||||||||||| ||||||||| |||||||| |||||||||     
T  9071 gttgatgtgctgaatttggagaaatctatttttttttaattcatgatgatgatgatgaaaagaattaaaaagggttgaatttgatttcttgatgtgttgt 9170  T
Q  111 tgcgctattgatgatgattt 130  Q
    ||| ||||||||||||||||    
T  9171 tgctctattgatgatgattt 9190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 23178259 - 23178141
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatga------aaagaattaaaatgggttgaatatgatttctcgatgtgttgat 111  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||      ||||||| |||| ||||||||| |||||||| ||||||||| |    
T  23178259 gttgatgtgctgaatttggagaaatctattttttttaattcatgatgatgatgatgaaaagaatcaaaaagggttgaatttgatttcttgatgtgttgtt 23178160  T
Q  112 gcgctattgatgatgattt 130  Q
     | ||||||||||||||||    
T  23178159 actctattgatgatgattt 23178141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 23589516 - 23589398
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatgatga------aaagaattaaaatgggttgaatatgatttctcgatgtgttgat 111  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||      ||||||| |||| ||||||||| |||||||| ||||||||| |    
T  23589516 gttgatgtgctgaatttggagaaatctattttttttaattcatgatgatgatgatgaaaagaatcaaaaagggttgaatttgatttcttgatgtgttgtt 23589417  T
Q  112 gcgctattgatgatgattt 130  Q
     | ||||||||||||||||    
T  23589416 actctattgatgatgattt 23589398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 12853475 - 12853361
Alignment:
Q  22 atgtgctgaatttggagaaatccattgtttttaattcatgatgatga------aaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc-g 114  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||      ||||||||||||  |||||||| |||||||| ||||||||| ||| |    
T  12853475 atgtgctgaatttggagaaatccatt-tttataattcatgatgatgatgatgaaaagaattaaaaaaggttgaatttgatttcttgatgtgttgttgctg 12853377  T
Q  115 ctattgatgatgattt 130  Q
     |||||||||||||||    
T  12853376 atattgatgatgattt 12853361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 6707686 - 6707802
Alignment:
Q  22 atgtgctgaatttggagaaatccattgttttt-aattcatga------tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc- 113  Q
    ||||||||||||||||||||| |||| ||||| |||||||||      ||||||||||||| |||| ||||||||| |||||| | ||||||||| |||     
T  6707686 atgtgctgaatttggagaaattcatttttttttaattcatgatgatgatgatgaaaagaataaaaaagggttgaatttgattttttgatgtgttgttgct 6707785  T
Q  114 gctattgatgatgattt 130  Q
    |||||||||||||||||    
T  6707786 gctattgatgatgattt 6707802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 44303249 - 44303164
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattc------atgatgatgaaaagaattaaaatgggttgaatatgattt 97  Q
    ||||||||| |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||||    
T  44303249 gttgatgtgatgaatttggagaaatccattgtttttaattcatgaagatgatgatgaaaagaattaaaatgggttgaatttgattt 44303164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 21388133 - 21388017
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatg---atgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgatgc- 113  Q
    ||||||| |||||||||| |||||| |||| ||||||||||||||||   |||||||||||||||| ||| |||| || |||| | ||||||||| |||     
T  21388133 gttgatgggctgaatttgaagaaatgcattttttttaattcatgatgatgatgaaaagaattaaaaagggatgaaaataatttattgatgtgttgttgct 21388034  T
Q  114 gctattgatgatgattt 130  Q
    |||||||| ||||||||    
T  21388033 gctattgacgatgattt 21388017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 18694190 - 18694074
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtttttaattcatgatg------atgaaaagaattaaaatgggttgaatatgatttctcgatgtgttgat 111  Q
    ||||||| |||||||||| |||||| |||| ||||||||||||||||      |||||||||||||||| ||| |||| || |||| | ||||||||| |    
T  18694190 gttgatgggctgaatttgaagaaatacattttttttaattcatgatgatgatgatgaaaagaattaaaaagggatgaaaataatttattgatgtgttgtt 18694091  T
Q  112 gcgctattgatgatgattt 130  Q
      |||| ||||||||||||    
T  18694090 --gctactgatgatgattt 18694074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 34083754 - 34083874
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgtt-tttaattcatga------tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtgttga 110  Q
    |||||||||||||| ||||||||||| ||| || ||||||||||||      ||||||||||||| |||| ||||||||| |||||||| |||||||||     
T  34083754 gttgatgtgctgaaattggagaaatctatttttctttaattcatgatgatgatgatgaaaagaataaaaaagggttgaatttgatttcttgatgtgttgt 34083853  T
Q  111 tgc-gctattgatgatgattt 130  Q
    ||| |||||||||||| ||||    
T  34083854 tgctgctattgatgataattt 34083874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 39422 - 39546
Alignment:
Q  18 gttgatgtgctgaatttggagaaatccattgttttt--aattcatga---------tgatgaaaagaattaaaatgggttgaatatgatttctcgatgtg 106  Q
    ||||||||| |||||||||||||||||||| |||||  |||||||||         ||||||||||||| |||| ||||||| | |||||||| ||||||    
T  39422 gttgatgtgttgaatttggagaaatccattttttttttaattcatgatgatgatgatgatgaaaagaataaaaaagggttgactttgatttcttgatgtg 39521  T
Q  107 ttgatgc-gctattgatgatgattt 130  Q
    ||| ||| |||||||||||||||||    
T  39522 ttgttgctgctattgatgatgattt 39546  T

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