View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3050_low_1 (Length: 740)

Name: NF3050_low_1
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3050_low_1
NF3050_low_1
[»] chr3 (18 HSPs)
chr3 (75-208)||(17945312-17945445)
chr3 (218-449)||(17945476-17945719)
chr3 (291-449)||(19416768-19416923)
chr3 (229-403)||(19403711-19403901)
chr3 (447-634)||(19404007-19404190)
chr3 (75-156)||(19403510-19403590)
chr3 (323-403)||(19378769-19378848)
chr3 (447-570)||(19378959-19379084)
chr3 (447-719)||(18106404-18106683)
chr3 (309-403)||(18106200-18106295)
chr3 (447-531)||(17945745-17945829)
chr3 (667-722)||(19404223-19404278)
chr3 (400-449)||(19403933-19403982)
chr3 (521-572)||(19417010-19417061)
chr3 (399-449)||(19378879-19378929)
chr3 (400-449)||(18106329-18106378)
chr3 (638-690)||(19379125-19379177)
chr3 (75-107)||(19416713-19416745)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 8e-60; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 75 - 208
Target Start/End: Original strand, 17945312 - 17945445
Alignment:
Q  75 ttttgtttgatgcaagagtttaggattattggaattattgagaatgagataatgtcatcttcttgtgcagttttgtaatatcgtattaaaaatacaagac 174  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||    
T  17945312 ttttgtttgatgcaagagtttaggattatcggaattattgagaatgagataatgtcatcttcttgtgcagttttgtaatatctcattcaaaatacaagac 17945411  T
Q  175 ttcctactaattatcagtaggttgatcttcattg 208  Q
    ||||||||||||||||||||||||||||||||||    
T  17945412 ttcctactaattatcagtaggttgatcttcattg 17945445  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 218 - 449
Target Start/End: Original strand, 17945476 - 17945719
Alignment:
Q  218 gtaattttgatgaaacagtccgacattttttaccacgacaacgaagttatccctaagcagttcctctt--aattct--------------aaacacgtac 301  Q
    ||||||||||||||||||| | |||||||  ||||||||||||||||||||||||||| |||||||||  ||||||              |||||| |||    
T  17945476 gtaattttgatgaaacagttccacattttg-accacgacaacgaagttatccctaagcggttcctcttctaattcttcaagataatgcttaaacacctac 17945574  T
Q  302 aacagacacaaatttcaccgattgtccattacttgcaaaacttattcaattctaaatttaaatgaaggttcgttcgaatcagaagaacgcttacatcaat 401  Q
    ||||||||   |||||||||||||| |||| ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  17945575 aacagaca---atttcaccgattgttcattgcttgctaaacttattcaattcaaaatttaaatgaaggctcgttcgaatcagaagaacgcttacatcaat 17945671  T
Q  402 tactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 449  Q
    ||||||||||||||||||||||||| ||||| |  |||||||||||||    
T  17945672 tactattttgtctcacagtgatcgcaaggcagattttgcttgctatgt 17945719  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 291 - 449
Target Start/End: Original strand, 19416768 - 19416923
Alignment:
Q  291 taaacacgtacaacagacacaaatttcaccgattgtccattacttgcaaaacttattcaattctaaatttaaatgaaggttcgttcgaatcagaagaacg 390  Q
    ||||||| |||||||||||   |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  19416768 taaacacctacaacagaca---atttcaccgattgttcattgcttgctaaacttattcaattctaaatttaaatggaggctcgttcgaatcagaagaacg 19416864  T
Q  391 cttacatcaattactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 449  Q
    |||||||||||||||||||||||||||||||||| | ||||| |  |||||||||||||    
T  19416865 cttacatcaattactattttgtctcacagtgatcacaaggcagattttgcttgctatgt 19416923  T

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Target: chr3; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 229 - 403
Target Start/End: Original strand, 19403711 - 19403901
Alignment:
Q  229 gaaacagtccgacattttttaccacgacaacgaagttatccctaagcagttcctctt--aattct--------------aaacacgtacaacagacacaa 312  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||| ||||||||  ||||||              |||||| ||||||| ||||||    
T  19403711 gaaacagttccacattttttaccactacaacgaagttatccctaagcacttcctcttctaattcttcaaaataatgcttaaacacctacaacaaacacaa 19403810  T
Q  313 atttcaccgattgtccattacttgcaaaacttattcaattctaaatttaaatgaaggttcgttcgaatcagaagaacgcttacatcaatta 403  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19403811 atttcactgattgttcattacttgcaaaacttattcaattcaaaatttaaatgaaggttcgttcgaatcagaagaacacttacatcaatta 19403901  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 447 - 634
Target Start/End: Original strand, 19404007 - 19404190
Alignment:
Q  447 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtattatatcatcatcacccatcctttaattgttgtgctaaagt 546  Q
    ||||||||||||||| ||| |||| | ||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||  ||||||||| |    
T  19404007 tgtcgtaaacaacctgatcttgcggcctagtgaataatataatgaacaacgatgctatattatatcatcatcacccatcctttaattactgtgctaaatt 19404106  T
Q  547 aaacttatcttttccgttagtcaatacnnnnnnnntaaaataggtgttggagaaaggta-tggtgtggaacaaaaataaagatataaag 634  Q
    ||| ||||||||||| |||||||| ||         |||| |||||||||||| ||||| | |||||||||||||||||||||||||||    
T  19404107 aaatttatcttttcctttagtcaaaacaaaa-----aaaaaaggtgttggagacaggtacttgtgtggaacaaaaataaagatataaag 19404190  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 19403510 - 19403590
Alignment:
Q  75 ttttgtttgatgcaagagtttaggattattggaattattgagaatgagataatgtcatcttcttgtgcagttttgtaatatc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  19403510 ttttgtttgatgcaagagtttaggattattggaattattgagagtgagataatgtcatcttcttgtgcag-tttgtaatatc 19403590  T

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Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 19378769 - 19378848
Alignment:
Q  323 ttgtccattacttgcaaaacttattcaattctaaatttaaatgaaggttcgttcgaatcagaagaacgcttacatcaatta 403  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  19378769 ttgttcattacttgcaaaacttattcaattctaaatttaaatgaaggttcgttcgaatcagaag-acacttacatcaatta 19378848  T

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Target: chr3; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 447 - 570
Target Start/End: Original strand, 19378959 - 19379084
Alignment:
Q  447 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgat--gctgtattatatcatcatcacccatcctttaattgttgtgctaaa 544  Q
    ||||||||||||||| ||| |||||| ||||||||||||||  ||||| ||||  ||| ||||||||||||||||||||||||||||||  |||||||||    
T  19378959 tgtcgtaaacaacctgatcttgcgacctagtgaataatattgtgaacaacgatatgctatattatatcatcatcacccatcctttaattactgtgctaaa 19379058  T
Q  545 gtaaacttatcttttccgttagtcaa 570  Q
    ||||| ||| |||| || ||||||||    
T  19379059 gtaaagttaactttccctttagtcaa 19379084  T

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Target: chr3; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 447 - 719
Target Start/End: Original strand, 18106404 - 18106683
Alignment:
Q  447 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtattatatcatcatcacccatcctttaattgttgtgctaaagt 546  Q
    ||||||||||||||  | | ||| |||||||||||||||||  ||||| | ||||| |||||||||||||||||| ||| ||||||| |||||| | |||    
T  18106404 tgtcgtaaacaacccgagcttgcaacatagtgaataatattgtgaacaacaatgctatattatatcatcatcaccaatcttttaattattgtgcaatagt 18106503  T
Q  547 aaacttatcttttccgttagtcaatacnnnnnnnntaaaataggtgttggagaaaggtatggtgtggaacaaaaataaagatataaagatt--------- 637  Q
    ||| | ||||||||  | |||||| ||         ||||||||||||| ||| | |||   ||| ||| |||||||||||||||||| |              
T  18106504 aaagtaatcttttcgctcagtcaaaacaaa------aaaataggtgttgcagacaagtaaaatgtcgaaaaaaaataaagatataaagttggttttagta 18106597  T
Q  638 ----tggaacatgaactgtagtatggcgtgtgccaattaatcacttaattgaaaattcccgatccaatgtctcacttgaaagattt 719  Q
        |||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |  |||||||||||||||||||||||||    
T  18106598 agcgtggaacatgaactgtagtatggtgtgtgccagttaatcacttaattgcaaatttctaatccaatgtctcacttgaaagattt 18106683  T

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Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 18106200 - 18106295
Alignment:
Q  309 acaaatttcaccgattgtccattacttgcaaaa-cttattcaattctaaatttaaatgaaggttcgttcgaatcagaagaacgcttacatcaatta 403  Q
    ||||||||||  |||||| |||||||||||||| ||||||||||| | |||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  18106200 acaaatttcattgattgttcattacttgcaaaaacttattcaatttttaatttaaatgaaggctcgttcaaatcagaacaactcttacatcaatta 18106295  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 447 - 531
Target Start/End: Original strand, 17945745 - 17945829
Alignment:
Q  447 tgtcgtaaacaacctaatcatgcgacatagtgaataatattaagaacagcgatgctgtattatatcatcatcacccatcctttaa 531  Q
    ||||||||||||||  ||| ||| | |||||||||||||||  |||||||||| || ||||||||||||||||| ||||||||||    
T  17945745 tgtcgtaaacaaccagatcttgcaatatagtgaataatattgtgaacagcgattctatattatatcatcatcactcatcctttaa 17945829  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 667 - 722
Target Start/End: Original strand, 19404223 - 19404278
Alignment:
Q  667 caattaatcacttaattgaaaattcccgatccaatgtctcacttgaaagatttgaa 722  Q
    |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  19404223 caattaatcacttaattgcaaattcccaatccaatgtctcaattgaaagatttgaa 19404278  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 19403933 - 19403982
Alignment:
Q  400 attactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 449  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  19403933 attactattttgtctcacagtgatcacaaggcaaacattgcttgctatgt 19403982  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 572
Target Start/End: Original strand, 19417010 - 19417061
Alignment:
Q  521 ccatcctttaattgttgtgctaaagtaaacttatcttttccgttagtcaata 572  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  19417010 ccatcgtttaattgttgagctaaagtaaatttatcttttccgttagtcaata 19417061  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 399 - 449
Target Start/End: Original strand, 19378879 - 19378929
Alignment:
Q  399 aattactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 449  Q
    ||||||||||||||| |||||||||| | ||||||||||||||||||||||    
T  19378879 aattactattttgtcgcacagtgatcacaaggcaaacattgcttgctatgt 19378929  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 18106329 - 18106378
Alignment:
Q  400 attactattttgtctcacagtgatcgctaggcaaacattgcttgctatgt 449  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  18106329 attactattgtgtctcacagtgatcacaaggcaaacattgcttgctatgt 18106378  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 690
Target Start/End: Original strand, 19379125 - 19379177
Alignment:
Q  638 tggaacatgaactgtagtatggcgtgtgccaattaatcacttaattgaaaatt 690  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||| |||||    
T  19379125 tggaacatgaactgtagtatgtcgtgtgccagttaatcatttaattgcaaatt 19379177  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 75 - 107
Target Start/End: Original strand, 19416713 - 19416745
Alignment:
Q  75 ttttgtttgatgcaagagtttaggattattgga 107  Q
    |||||||||||||||||||||||||||||||||    
T  19416713 ttttgtttgatgcaagagtttaggattattgga 19416745  T

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