View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_10 (Length: 314)
Name: NF3050_low_10
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_10 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 16207 - 16480
Alignment:
| Q |
19 |
ccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgccata |
118 |
Q |
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| T |
16207 |
ccaccggcctcaagttcattcggaggtctgggttgggctgttttggtgattggtgtcattgcagcgttctttgtgggttactgctgcagaatccgccata |
16306 |
T |
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| Q |
119 |
gtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatgcatttttcatacac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16307 |
gtggagtcgaagcagctgaagaagagtctattgatgaaaatgatttgacataggtggatgaagtatgattataccataggcatatgcatttttcatacac |
16406 |
T |
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| Q |
219 |
atgtatttttaactagacattatcatgtgatcttccacgtcctatatctgtactgctcttcaacaatcatttat |
292 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
16407 |
atgtatttttaactagacattatcatgtgatctttcacgtcctatatttgtactgctcttcaacaatcatttat |
16480 |
T |
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