View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_11 (Length: 312)
Name: NF3050_low_11
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 30951752 - 30952046
Alignment:
| Q |
1 |
aaatattctgatcatagtgttcaaatataatttctattttctaatatgtcatccttgaatatgctaaccaaataagtattttcttttgacctgtctgaca |
100 |
Q |
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| T |
30951752 |
aaatattctgatcatagtgttcaaatataatttctattttctaatatgtcatccctgaatatgctaaccaaataagtattttgttttgacctgtctgaca |
30951851 |
T |
|
| Q |
101 |
cacctcaaagtatctctatagataagttgattatgaattcactattggagtgtttagcattaacataatgttcatccaggccaatagacatgagagttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30951852 |
cacctcaaagtatctctatagataagttgattatgaattcactattggagtgtttagcattaacataatgttcatccatgccaatagacatgagagttat |
30951951 |
T |
|
| Q |
201 |
ttcaatttgtaagttgttgtagacaataaacaaagtcaactatgtaccttattgttgcaatcatcaagtgtctccgtagaaagatactagtaaat |
295 |
Q |
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| T |
30951952 |
ttcaatttgtaagttgttgtagacaataaacaaagtcaactatgtaccttattgttgcaatcatcaagtgtctccgtagaaagatactagtaaat |
30952046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 31 - 224
Target Start/End: Original strand, 31016101 - 31016292
Alignment:
| Q |
31 |
tttctattttctaatatgtcatccttgaatatgctaaccaaataagtattttcttttgacctgtctgacacacctcaaagtatctctatagataagttga |
130 |
Q |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||||||| |
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| T |
31016101 |
tttctattttctactatgccatttcagaatatgctaaccaaataagtattttcttttgaattttctgacacaccttaaagtatctctgtagataagttga |
31016200 |
T |
|
| Q |
131 |
ttatgaattcactattggagtgtttagcattaacataatgttcatccaggccaatagacatgagagttatttcaatttgtaagttgttgtagac |
224 |
Q |
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| T |
31016201 |
ttatgaattcagtattgcagtgtttaacattaacataatgttcatccatgccaatagaca--cgagttatttctatttgtaagtttttgtagac |
31016292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 31016303 - 31016347
Alignment:
| Q |
251 |
attgttgcaatcatcaagtgtctccgtagaaagatactagtaaat |
295 |
Q |
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| T |
31016303 |
attgttgcaatcatcaagtgtctccataaaaaaatactagtaaat |
31016347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 31 - 224
Target Start/End: Complemental strand, 23984546 - 23984353
Alignment:
| Q |
31 |
tttctattttctaatatgtcatccttgaatatgctaaccaaataagtattttcttttgacctgtctgacacacctcaaagtatctct--atagataagtt |
128 |
Q |
| |
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|||| ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||| || |||||||| |
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| T |
23984546 |
tttcaattttctaatatgccatttcagaatatgctaaccaaatatgtattttcttttgacctgtctgacacactttaaagtttctctccattgataagtt |
23984447 |
T |
|
| Q |
129 |
gattatgaattcactattggagtgtttagcattaacataatgttcatccaggccaatagacatgagagttatttcaatttgtaagttgttgtagac |
224 |
Q |
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|||||||| ||| |||| |||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| ||||| ||||| |||||||| |
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| T |
23984446 |
gattatgatttctacattgcagtgtttagcatcaacataatgttcatccatgccaacagaca--cgagttatttctatttgcaagttattgtagac |
23984353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 23984342 - 23984297
Alignment:
| Q |
251 |
attgttgcaatcatcaagtgtctccgtagaaagatactagtaaatg |
296 |
Q |
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||||||||||||||||||| |||| |||||||||||| ||||||| |
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| T |
23984342 |
attgttgcaatcatcaagtacctccatagaaagatacttgtaaatg |
23984297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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