View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_17 (Length: 270)
Name: NF3050_low_17
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 40569572 - 40569454
Alignment:
| Q |
135 |
cataggccaaaacatcgtttctcaggtatttcattttctccacttctcatttcatttcatgttagttaggaatttcaaatttcaactattataagtcaat |
234 |
Q |
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| T |
40569572 |
cataggccaaaacatcgtttctcaggtatttcattttctccacttctcatttcatttcatgttagttaggaatttcaaatttcaactattataagtcaat |
40569473 |
T |
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| Q |
235 |
attaggtttctaatttgtg |
253 |
Q |
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| T |
40569472 |
attaggtttctaatttgtg |
40569454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 40569706 - 40569604
Alignment:
| Q |
1 |
atccgatatggttccgaatcactttccacgaattcattcgagttaatgaatttttactttcctcagcaactcttcactgttgaacaaacctggctcaacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40569706 |
atccgatatggttccgaatcactttccacgaattcattcgagttaatgaatttttactttcctcagcaactcttcactgttgaacaaacctggctcaacc |
40569607 |
T |
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| Q |
101 |
tca |
103 |
Q |
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||| |
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| T |
40569606 |
tca |
40569604 |
T |
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