View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3050_low_18 (Length: 257)
Name: NF3050_low_18
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 47600997 - 47600819
Alignment:
| Q |
60 |
ttataggctgcagtggatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaac |
159 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47600997 |
ttataggctgcagtgaatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaac |
47600898 |
T |
|
| Q |
160 |
ttgtaatggttggtgctccagcgaagcctctggagctccctgtctttactttgctttcgggtaagttagctagcatata |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47600897 |
ttgtaatggttggtgctccagcgaagcctctggagctccctgtctttactttgctttcgggtaagttagctagcatata |
47600819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 13389540 - 13389741
Alignment:
| Q |
28 |
aatcaattaattaactaattatgttaatgattttataggctgcagtggatactttggatggtatcattgacacagtttcagctgaacatcctctctcacc |
127 |
Q |
| |
|
|||||||| || ||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||| || ||||||||||| | |||||| ||| ||| |
|
|
| T |
13389540 |
aatcaattcatgaactaattatgttaatgtttttatagtctgcattgggtactttggatggtatcatcgatacagtttcagcaaatcatcctatcttacc |
13389639 |
T |
|
| Q |
128 |
tctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccagcgaagcctctggagctccctgtctttactttgctttcgggtaagtta |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| || | |||||| ||||| |||| |||||| |||| ||| ||||||| || |
|
|
| T |
13389640 |
cctaattggattattgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctttggagatccccgtctttcctttaattttgggtaagcta |
13389739 |
T |
|
| Q |
228 |
gc |
229 |
Q |
| |
|
|| |
|
|
| T |
13389740 |
gc |
13389741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 229
Target Start/End: Original strand, 13385714 - 13385915
Alignment:
| Q |
28 |
aatcaattaattaactaattatgttaatgattttataggctgcagtggatactttggatggtatcattgacacagtttcagctgaacatcctctctcacc |
127 |
Q |
| |
|
|||||||| || || |||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||| || |||||||| | |||||| ||| || |
|
|
| T |
13385714 |
aatcaattcatgaaataattatgttaatgtttttatagtctgcactgggtactttggatggtatcattgataccgtttcagcaaatcatcctgtcttgcc |
13385813 |
T |
|
| Q |
128 |
tctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccagcgaagcctctggagctccctgtctttactttgctttcgggtaagtta |
227 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |||| |||||| |||| ||| ||||||| || |
|
|
| T |
13385814 |
actacttggattactgaagtctcatggaaaacttgtaatggttggtgtacctgacaagcctctggagatccccgtctttcctttaattttgggtaagcta |
13385913 |
T |
|
| Q |
228 |
gc |
229 |
Q |
| |
|
|| |
|
|
| T |
13385914 |
gc |
13385915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 13453579 - 13453431
Alignment:
| Q |
63 |
taggctgcagtggatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttg |
162 |
Q |
| |
|
||||||||| || ||||||||||||||| || |||||||||||||| || ||||| || | |||||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
13453579 |
taggctgcaacggctactttggatggtattatcgacacagtttcagcggatcatccgctattacctctgattggtttactcaagtctcatggaaagcttg |
13453480 |
T |
|
| Q |
163 |
taatggttggtgctccagcgaagcctctggagctccctgtctttacttt |
211 |
Q |
| |
|
||||||||||||| || | |||||||| ||||| ||||| ||| |||| |
|
|
| T |
13453479 |
taatggttggtgcacctgaaaagcctctagagcttcctgtttttccttt |
13453431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 13393964 - 13394110
Alignment:
| Q |
54 |
atgattttataggctgcagtggatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatg |
153 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| ||||| || ||||||||||| || |||||||||| ||||||| |||| ||| | || | ||| | |
|
|
| T |
13393964 |
atgattttataggctgcgatgggtactttggatggcatcatcgatacagtttcagcggatcatcctctcttacctctagttggtttattaaaatatcacg |
13394063 |
T |
|
| Q |
154 |
gaaaacttgtaatggttggtgctccagcgaagcctctggagctccct |
200 |
Q |
| |
|
|||||||||||||||| ||||| || | ||||||| |||||||||| |
|
|
| T |
13394064 |
gaaaacttgtaatggtcggtgcacctgacaagcctccggagctccct |
13394110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 13411307 - 13411419
Alignment:
| Q |
78 |
actttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtgctc |
177 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||| ||| | |||| ||| ||||||| ||||| || ||||||||||| |||||| |||||||||| | |
|
|
| T |
13411307 |
actttggatggtattattgacacaatttctgctgatcattccctcttacccctaattgatttactaaaatctcatggaaagcttgtattggttggtgccc |
13411406 |
T |
|
| Q |
178 |
cagcgaagcctct |
190 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
13411407 |
cagagaagcctct |
13411419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 13412812 - 13412715
Alignment:
| Q |
77 |
tactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtg |
174 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||| ||| | ||||| | |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
13412812 |
tactttggatggtattattgacacagtttcagctgttcatcctctcttaccaatgattggtctcttgaagtctcatggaaagcttataatgcttggtg |
13412715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 13426065 - 13425953
Alignment:
| Q |
62 |
ataggctgcagtggatactttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaactt |
161 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||| || ||||| ||||| || |||||| ||| ||| | ||||| ||| |||| ||| ||||||||||| |
|
|
| T |
13426065 |
ataggctgcaatgggtactttgaatggtattatcgacactgtttcggcaagtcatcctatcttaccattgattggtttattgaaatctaatggaaaactt |
13425966 |
T |
|
| Q |
162 |
gtaatggttggtg |
174 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13425965 |
gtaatggttggtg |
13425953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 28431168 - 28431283
Alignment:
| Q |
81 |
ttggatggtatcattgacacagtttcagctgaacatcctctctcacctctaattggattactgaagtctcatggaaaacttgtaatggttggtgctccag |
180 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| | | |||| | ||||| | |||| ||||||||||||||||| ||||||||||| || | |
|
|
| T |
28431168 |
ttggatggtatcattgacacagtttctgccgtccatcctttgttacctttgattggtcttttgaaatctcatggaaaacttgttatggttggtgcacctg |
28431267 |
T |
|
| Q |
181 |
cgaagcctctggagct |
196 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28431268 |
agaagcctctggagct |
28431283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University