View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_19 (Length: 256)
Name: NF3050_low_19
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 50568765 - 50568524
Alignment:
| Q |
1 |
tgcggtgggttcaaattccacttagttaaattgctatagtgtctgtatagcctctattctctatttaagtacattttgtactaaaaagtgtattacggat |
100 |
Q |
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| T |
50568765 |
tgcggtgggttcaaattccactttgttaaattgctatagtgtccgtatagcctctattctctattcaagtacattttgtactaaaaagtgtattacggat |
50568666 |
T |
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| Q |
101 |
caaaagtgatttgttctaaaaattgtattgtggattaaaggtgatttgttcaaattctgctacgctatctaactactataatcaccacttgacgtccttg |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
50568665 |
caaaagtgatttgttctaaaaagtgtattgtggattaaaggtgatttgttcaaattctgctacgctatctaactactataaccgccacttgacgtccttg |
50568566 |
T |
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| Q |
201 |
tttaacataaaacagcggtgggttcaaattccactatgttaa |
242 |
Q |
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| T |
50568565 |
tttaacataaaacagcggtgggttcaaattccactatgttaa |
50568524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 242
Target Start/End: Complemental strand, 50568551 - 50568318
Alignment:
| Q |
2 |
gcggtgggttcaaattccacttagttaaattgctatagtgtctgtatagcctctattctctatttaagtacattttgtactaaaaagtgtattacggatc |
101 |
Q |
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| T |
50568551 |
gcggtgggttcaaattccactatgttaaatcgctacagtgtcggtatagcctctattc-------aagtacattctgtactaaaaagtgtattactgatc |
50568459 |
T |
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| Q |
102 |
aaaagtgatttgttctaaaaattgtattgtggattaaaggtgatttgttcaaattctgctacgctatctaactactataatcaccacttgacgtccttgt |
201 |
Q |
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| T |
50568458 |
aaaagtgatttgttctaaaaaatgtattgcagattaaaagtgatttgttcaaattctgctacgctatctaactactacaatcaccacttgacgtccttgt |
50568359 |
T |
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| Q |
202 |
ttaacataaaacagcggtgggttcaaattccactatgttaa |
242 |
Q |
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| T |
50568358 |
ttaacataaaacagcggtgggttcaaattccactatgttaa |
50568318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 50568345 - 50568177
Alignment:
| Q |
2 |
gcggtgggttcaaattccacttagttaaattgctatagtgtctgtatagcctctattctctatttaagtacattttgtactaaaaagtgtattacggatc |
101 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
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| T |
50568345 |
gcggtgggttcaaattccactatgttaaattgctatagtgtcggtatagcctctattc-------aaggacattttgtactaaaaagtgtattaccaatc |
50568253 |
T |
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| Q |
102 |
aaaagtgatttgttctaaaaattgtattgtggattaaaggtgatttgttcaaattctgctacgctatctaactact |
177 |
Q |
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| T |
50568252 |
aaaagtgataagttctaaaaagtgtattgcggattaaaagtgatttgttcaaattctgctatgctatctaactact |
50568177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 50568838 - 50568737
Alignment:
| Q |
141 |
gtgatttgttcaaattctgctacgctatctaactactataatcaccacttgacgtccttgtttaacataaaacagcggtgggttcaaattccactatgtt |
240 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
50568838 |
gtgatttgttcaaattttgctacgctatctaactactataaccgctacttgacgtccttgtttaacataaaactgcggtgggttcaaattccactttgtt |
50568739 |
T |
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| Q |
241 |
aa |
242 |
Q |
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|| |
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| T |
50568738 |
aa |
50568737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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