View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_2 (Length: 596)
Name: NF3050_low_2
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 14 - 584
Target Start/End: Original strand, 24949912 - 24950486
Alignment:
| Q |
14 |
tcatcattgagctagaccagaatgatcaaagccgagagctaagggcgaaatagcccgagacttgtaagtgttaaagtcattgtaagttgacttgtctgtt |
113 |
Q |
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| T |
24949912 |
tcatcattgagctagaccagaatgatcaaagccgagagctatgggcgaaatagccagagacttgtaagtgttaaagtcattgtaagttgacttgtctgtt |
24950011 |
T |
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| Q |
114 |
ctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatctttcgagaataaagcatgaagtctgaaccttatgaagatttta |
213 |
Q |
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| T |
24950012 |
ctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatctttcgagaataaagcacgaggtccgaaccttatgaagatttta |
24950111 |
T |
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| Q |
214 |
gattttcattaagcatttgaatcgaaccggatgcaaat-aagaaacaggacaaactatagtctttgaaacataaacatgcatgacaacatcatgtgcgca |
312 |
Q |
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| T |
24950112 |
gattttcattaagcatttgaatcgaaccggatgcaactaaagaaacaggacaaactatagtctttgaaacataaacatgcatgacaacatcatgtgcgca |
24950211 |
T |
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| Q |
313 |
taagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatacattttctggtatgtctagaa---attggttatactgctnnnnnnnntc |
409 |
Q |
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| T |
24950212 |
taagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatacattttctggtatgtctagaaattattggctatactgctaaaaaaaatc |
24950311 |
T |
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| Q |
410 |
ttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttgtccacgttcatagagaaaaagtaggcgacgatcatcaacaatctgtcaaaca |
509 |
Q |
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| T |
24950312 |
ttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttgtccacgttcatagataaaaagtaggcgacgatcatcaacaatctgtcaaaca |
24950411 |
T |
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| Q |
510 |
caaacaactagatattagttggatgcattggcaacaaactagaagtgaccaaatgataagtggaatgagaaatat |
584 |
Q |
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| T |
24950412 |
caaacaactagatattagttggatgcattggcaacaaactaggagtgaccaaatgataagtggaatgagaaatat |
24950486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 408 - 584
Target Start/End: Original strand, 24367941 - 24368116
Alignment:
| Q |
408 |
tcttcatgaccttcgaatgcaacaataaacccttccatgggtttcttttgtccacgttcatagagaaaaagtaggcgacgatcatcaacaatctgtcaaa |
507 |
Q |
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| T |
24367941 |
tcttcctgaccttcgaatgcaacaataaacccttccatgagtttcttttttccacgttcatagagaaaaagtagccggcgatcatcaacaatctgtcaaa |
24368040 |
T |
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| Q |
508 |
cacaaacaactagatattagttggatgcattggcaacaaactagaagtgaccaaatgataagtggaatgagaaatat |
584 |
Q |
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| T |
24368041 |
cacaaacagct-gatattagttggatgcatcggcaacaaactagaagtgaccaaatgataagtggaatgagaaatat |
24368116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 74 - 364
Target Start/End: Original strand, 24367141 - 24367428
Alignment:
| Q |
74 |
cttgtaagtgttaaagtcattgtaagttgacttgtctgttctgattcacttgattatccatttgtttctatcaccatcccaagcacactcgatgatcttt |
173 |
Q |
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| T |
24367141 |
cttgtaagtatttaagtcattgggagttgacttatctgttctgactcgcttgaatatccattcgtttctatcaccatcccaagcacactcgatgattttt |
24367240 |
T |
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| Q |
174 |
cgagaataaagcatgaagtctgaaccttatgaagattttagattttcattaagcatttgaatcgaaccggatgcaaat-aagaaacaggacaaactatag |
272 |
Q |
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| T |
24367241 |
ccagaataaagcatggggtctgaaccttctgcagattttagattttcattaagcatttgaattgaaccgaatgcaactaaaaaaacaggacaagctacag |
24367340 |
T |
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| Q |
273 |
tctttgaaacataaacatgcatgacaacatcatgtgcgcataagtggtgctgaaacatcatagcagacaaacttagatgcctattcccatac |
364 |
Q |
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| T |
24367341 |
acttcaaaacgtaaa----catgacaacatcatgcgcgcacaagtgttgctgaaacatcattacaaacaaacttagacgccaattcccatac |
24367428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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