View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_23 (Length: 246)
Name: NF3050_low_23
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20086218 - 20085990
Alignment:
| Q |
1 |
caaagttcagatctttgaattcattttctcnnnnnnntgagagacaaattttcatgttttagtgaaaattcaataaatgtctcaaatgcttcatgttcta |
100 |
Q |
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| T |
20086218 |
caaagttcagatctttgaattcattttctcaaaaaaatgagagacaaattttcatgttttagtgaaaattcaataaatgtctcaaatgcttcatgttcta |
20086119 |
T |
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| Q |
101 |
gctattcaaacaacacatgcatttcaccaaacgttgtttcaccttcaatccaaaactcaatctcaagtgtttacaaattagtcctttcaacattgaaaca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20086118 |
gctattcaaacaacacatgcatttcaccaaatgttgtttcaccttcaatccaaaactcaatctcaagtgtttacaaattagtcctttcaacattgaaaca |
20086019 |
T |
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| Q |
201 |
ccttttgatcactgttacatggtgtaaaa |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
20086018 |
ccttttgatcactgttacatggtgtaaaa |
20085990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 1021525 - 1021458
Alignment:
| Q |
131 |
acgttgtttcaccttcaatccaaaactcaatctcaagtgtttacaaattagtcctttcaacattgaaa |
198 |
Q |
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||||||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||| |||||||||||| |
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| T |
1021525 |
acgttgtttcaccttcaattcaaaacttaatttcaagtgtttagaaattggtcctctcaacattgaaa |
1021458 |
T |
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