View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_3 (Length: 566)
Name: NF3050_low_3
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 40942150 - 40942709
Alignment:
| Q |
1 |
gcagtcttcaaagttcctgacggttccaagcccccaggcactgttgcagctgtgctgaaggtaatttagatcattgcttgtggaaggacatgttcttttt |
100 |
Q |
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| T |
40942150 |
gcagtcttcaaagttcctgacggttccaagcccccaggcactgttgcagctgtgctgaaggtaatttagatcattgcttgtggaaggacatgttcttttt |
40942249 |
T |
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| Q |
101 |
cattccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattttggtctatgttgcatgaacattccaaaacttatgggcatctgtcatgtt |
200 |
Q |
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| T |
40942250 |
ccttccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattttggtctatgttgcatgaacattccaaaacttatgggcatctgtcatgtt |
40942349 |
T |
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| Q |
201 |
catattcaatataacatttttattcatacttctacctttttcacattgtagctatacttttatcgtttaggaaattcatcacccatcacctccctttaaa |
300 |
Q |
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| T |
40942350 |
catattcaatataacatttttattcatacttctacctttttcacattgtagctatacttttatcgtttaggaaattcatcacccatcacctccctttaaa |
40942449 |
T |
|
| Q |
301 |
atagtcttgcaaccttgacacccaaaaaaccacagcaaaggatagcatactttgatcctcttagtgcagtttannnnnnnaatggcttgatgccctttcg |
400 |
Q |
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| T |
40942450 |
atagtcttgcaatcttgacacccaaaaaaccacagcaaaggatatcatactttgatcctcttagtgcagtttattttgttaatggcttgatgccctttcg |
40942549 |
T |
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| Q |
401 |
atttgcagtgtgacaagttagacaagctcttggttttattatctcaatcaatcatgcagatacttcccacttatggtggtctattaaagatcctttggat |
500 |
Q |
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| T |
40942550 |
atttgcaatgtgacaagttagacaagctcttggttttattatctcaatcaatcatgcagatacttcccacttatggtggtctattaaagatcctttggat |
40942649 |
T |
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| Q |
501 |
cagaggttttgtttcattgaatgttggaacaaacttatccttattcacgatattcttcga |
560 |
Q |
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| T |
40942650 |
cagaggttttgtttcattgaatgttggaacaaacttgtccttattcacgattttgttcga |
40942709 |
T |
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