View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3050_low_9 (Length: 328)
Name: NF3050_low_9
Description: NF3050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3050_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 116 - 300
Target Start/End: Complemental strand, 2875011 - 2874831
Alignment:
| Q |
116 |
atattctaataacaaaattgagcttggattttctaatttatataaacaaaccaagcacaaataaaacaatctttgtcaaagcaagcacaacttctgacaa |
215 |
Q |
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| T |
2875011 |
atattctaataacaaaattgggtttggattttctaatttatataaac----caagcacaaataaaacaatctttatcaaagcaagcacaacttctgacaa |
2874916 |
T |
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| Q |
216 |
catagaaacaaagaaaatgcatagtgtaaatccccctagaagatttaatcttagaactaattctaacggtagaaattattctaat |
300 |
Q |
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| T |
2874915 |
catagaaacaaagaaaatgcacagtgtaaatccccctagaagatttaatcttagaactaattctaacggtagaaattattctaat |
2874831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 2875482 - 2875409
Alignment:
| Q |
24 |
tattagttacatgattgttgtgaaattctaggaattagaacggcaaccaaaggtgaaggccattttagaaaagt |
97 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2875482 |
tattagttacatgattgttgtgaaattcttggaattagaacggcaaccaaaggtgaaggccattttagaaaagt |
2875409 |
T |
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