View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_high_15 (Length: 230)
Name: NF3051_high_15
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_high_15 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0059 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15884919 - 15885148
Alignment:
| Q |
1 |
tggagcttttatcgcaaaaacgtgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc |
100 |
Q |
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| T |
15884919 |
tggagcttttatcgcaaaaacatgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc |
15885018 |
T |
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| Q |
101 |
catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcacgtctttg |
200 |
Q |
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| T |
15885019 |
catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcgcgtctttg |
15885118 |
T |
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| Q |
201 |
gggaagggagaatcaattgcaggaggtttt |
230 |
Q |
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| T |
15885119 |
gggaagggagaatcaattgctggaggtttt |
15885148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 12638117 - 12637900
Alignment:
| Q |
13 |
cgcaaaaacgtgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatccatcaacctcac |
112 |
Q |
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| T |
12638117 |
cgcaaaaacgtgttagttcattccggcctataagagaagaagagttcaccaatctcatcaaaagtattgattcacaacaaggatcacccatcaacatcac |
12638018 |
T |
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| Q |
113 |
tgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcacgtctttggggaagggagaa |
212 |
Q |
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| T |
12638017 |
tcaagccgtagttacatcaattatgactattactacaagggctgcgtttggaaacaaatgcaaaggccaagaacagctcgtatcgttggcaaatggagaa |
12637918 |
T |
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| Q |
213 |
tcaattgcaggaggtttt |
230 |
Q |
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| T |
12637917 |
tcagttggaggaggtttt |
12637900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12611129 - 12610900
Alignment:
| Q |
1 |
tggagcttttatcgcaaaaacgtgtgagttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatc |
100 |
Q |
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| T |
12611129 |
tggagcttttcacacaaaagcgtgttagttcgtttcaaccaataagagaagaagagcttaacaatctcgtaaaaaagattgattcgcaacaagggtcgcc |
12611030 |
T |
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| Q |
101 |
catcaacctcactgaacttgtagtttcatcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcacgtctttg |
200 |
Q |
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| T |
12611029 |
cgtcaatataactcagcttgtagtttcatcaacattttctatcattacaaaggctgcgtttggcagcaaaggcaaaggcagagaagagtttggatctatt |
12610930 |
T |
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| Q |
201 |
gggaagggagaatcaattgcaggaggtttt |
230 |
Q |
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| T |
12610929 |
ggagatggagaatcaattgcaggaggtttt |
12610900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 230
Target Start/End: Complemental strand, 63234 - 63033
Alignment:
| Q |
29 |
ttcattccatccaataagagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatccatcaacctcactgaacttgtagtttca |
128 |
Q |
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| T |
63234 |
ttcattccggccaataagagaagaagagctctccaatctcatcaaaaggattgatttgcaacaaggattgcctgtcaacatcactgaacttgtacttaca |
63135 |
T |
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| Q |
129 |
tcgacatttgctatcctttcaagggctgcatttggaaacaaatgcaaagaccaagaagagttcacgtctttggggaagggagaatcaattgcaggaggtt |
228 |
Q |
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| T |
63134 |
acaatgatttctatcatttcaagggctgcgtttggcgacaaatgcaaagcccaagaacagtttgcgtcattgggaaatataggatcaattggaggaggtt |
63035 |
T |
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| Q |
229 |
tt |
230 |
Q |
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|| |
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| T |
63034 |
tt |
63033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 23018220 - 23018180
Alignment:
| Q |
145 |
tttcaagggctgcatttggaaacaaatgcaaagaccaagaa |
185 |
Q |
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| T |
23018220 |
tttcaagggctgcctttggcaataaatgcaaagaccaagaa |
23018180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 23025337 - 23025269
Alignment:
| Q |
45 |
agagaagaagtgtttaccaatctcatcaaaaggattggttcgaagcaagggtcatccatcaacctcact |
113 |
Q |
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| T |
23025337 |
agagaagaagagttctccaatcttgtcaaatggattgcttcgaaggaaggatcacccatcaacctcact |
23025269 |
T |
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