View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_high_17 (Length: 224)
Name: NF3051_high_17
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 47391286 - 47391081
Alignment:
| Q |
1 |
ctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagcttgggaaaacagaaaa |
100 |
Q |
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| T |
47391286 |
ctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagcttgggaaaacagaaaa |
47391187 |
T |
|
| Q |
101 |
agctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaagaatctgaggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47391186 |
agctaagctgcaaatggagatttctgatttgaaagggaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaagaatctgaggtt |
47391087 |
T |
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| Q |
201 |
ctctct |
206 |
Q |
| |
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|||||| |
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| T |
47391086 |
ctctct |
47391081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40624844 - 40625048
Alignment:
| Q |
1 |
ctccaaattaagtgcatcagagtcggtgacagcttgcttggaagtcgcaaagaaggagaaaaaatatttgaagaaacttctagcttgggaaaacagaaaa |
100 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| | | || |
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| T |
40624844 |
ctccaaattaagtgcatcagagtcagtgacagcttgcttggaagttgcaaaaaaggagaaaaaatacttgaagaaacttctagcttgggaaaa-acagaa |
40624942 |
T |
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| Q |
101 |
agctaagctgcaaatggagatttctgatttgaaagagaagatattagaggattgagaagtgtcagctcagaataagcagcgccaaaaagaatctgaggtt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40624943 |
agctaagctgcaaaaggagatttctgatttgaaagagaagatattagaggatcgagaagtgtcagctcagaataagcagcgccaaaaagaagctgaggtt |
40625042 |
T |
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| Q |
201 |
ctctct |
206 |
Q |
| |
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|||||| |
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| T |
40625043 |
ctctct |
40625048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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