View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_high_2 (Length: 433)
Name: NF3051_high_2
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 48846071 - 48846258
Alignment:
| Q |
149 |
cttccttaaaagtgaatttaaagtttaaggctaaaacaatttctttagnnnnnnnnntgttatgtccatgcttaaaattaaaaccaatattagagacaag |
248 |
Q |
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| T |
48846071 |
cttccttaaaagtgaatttaaagtttaaggctaaaacaatttctttagaaaaaaaa-tgttatgtccatgcttaaaattaaaaccaatattagagacaag |
48846169 |
T |
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| Q |
249 |
atcaattttattcaaaaacacatgtctaagtcaataannnnnnncttaattgactggtttgtggggattctagagtggtgtcgctcgtc |
337 |
Q |
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| T |
48846170 |
atcaattttattcaaaaacacatgtctaagttaataatttttttcttaattgacgggtttgtagggattctagagtggtgtcgctcgtc |
48846258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 48845942 - 48846003
Alignment:
| Q |
6 |
aaaaccaaacttagaagttaaaattgcattttgaggcaaatgtatttgatttgacagtgacg |
67 |
Q |
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| T |
48845942 |
aaaaccaaacttggaagttaaaattgcattttgaggcaaatgtatttgatttgacagtgacg |
48846003 |
T |
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