View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_high_3 (Length: 417)
Name: NF3051_high_3
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 12 - 398
Target Start/End: Complemental strand, 44891335 - 44890949
Alignment:
| Q |
12 |
atgaatattctgatattcttaatgatggatgtagtgaagaacattggaagaaaacgaatatagataagagaagaaagactgaatatagtctaccaagtga |
111 |
Q |
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| T |
44891335 |
atgaatattctggtactcttaatgatggatgtattgaagaacattggaagaaaacgaatatagataagagaagaaagactgaatatagtctaccaagtga |
44891236 |
T |
|
| Q |
112 |
gtccacgaagcaaattggtgctgaacaatactagttagtcctacatcgtgtagtcaagagagtgagtaaatggatgtatgatataaaagtggaagtgagt |
211 |
Q |
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| T |
44891235 |
gtccacgaagcaagttggtgctgaacaatactagttagtcctacatcgtgtagtcaagagagtgagtaaatggatgtatgatataaaagtagaagtgagt |
44891136 |
T |
|
| Q |
212 |
accacatataattcatacctttctccaccttttcttggtcttttggctaagatcaaagtgtagtgtacgtttttatctgtttaatatcaagaaattaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44891135 |
accacatataattcatacctttctccaccttttcttggtcttttggctaagatcaaagtgtagtgtacgtttttatctgtttaatatcaagaaattaaac |
44891036 |
T |
|
| Q |
312 |
tagttttttgaggaagcagtagtttgctggttaaaatgctgaatcgtaaaccttctgtcatggagcgagtgtcggtggagtaggagt |
398 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44891035 |
tagttttttgaggaagcagcagtttgctggttaaaatgccgaatcgtaaaccttctgtcatggagcgagtgtcggtggagtaggagt |
44890949 |
T |
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