View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3051_high_4 (Length: 415)
Name: NF3051_high_4
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 39651447 - 39651835
Alignment:
| Q |
17 |
tctctctctgatgtttttacgaaaagatgaagttctgcaagacctatcaggaatacatgcaagctcaggagcagaagaagctccctgttgtgggattcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39651447 |
tctctctctgatgtttttacgaaaagatgaagttctgcaagacctatcaggagtacatgcaagctcaggagcagaagaagctccctgttgtgggattcaa |
39651546 |
T |
|
| Q |
117 |
gaagctcaaaaagatcatgaaaaaatgtagacaatcttctcaattccataaaccttgccctgatcaatgcccatgtacgttacgtcacccatcatttcac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39651547 |
gaagctcaaaaagatcatgaaaaaatgtagacgatcttctcaattccataaaccttgccctgatcaatgcccatgtacgttacgtcacccatcatttcgc |
39651646 |
T |
|
| Q |
217 |
nnnnnnnnatctatttcaaatctattcagttaatctttttgttttaattttaccgattagctatgttttctatgaatcaattccaaatt-attttcaaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39651647 |
---tttttatctatttcaaatctattcagttaatctttttgttttaattttaccgattagctatgttttctatgaatcaattccaaattaattttcaaat |
39651743 |
T |
|
| Q |
316 |
ttttgaattcatatctgttagatctgaatatcagaatttatagcttatatattctcgatccaattcaggttcattcaatttttattcatctc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39651744 |
ttttgaattcatatctgttagatctgaatatcagaatttatagcttatatattctctatccaattcaggttcattcaatttttattcatctc |
39651835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 20173925 - 20173826
Alignment:
| Q |
38 |
aaaagatgaagttctgcaagacctatcaggaatacatgcaagctcaggagcagaagaagctccctgttgtgggattcaagaagctcaaaaagatcatgaa |
137 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||||| |||||||||||||| || |||| || |||||||||||||||||||| ||| |||| |
|
|
| T |
20173925 |
aaaacatgaagttctgcaaaaaataccaggaatacatgcaaggccaggagcagaagaaacttcctgaggttggattcaagaagctcaaaaaaatcttgaa |
20173826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 20218651 - 20218552
Alignment:
| Q |
38 |
aaaagatgaagttctgcaagacctatcaggaatacatgcaagctcaggagcagaagaagctccctgttgtgggattcaagaagctcaaaaagatcatgaa |
137 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||||| |||||||||||||| || |||| || |||||||||||||||||||| ||| |||| |
|
|
| T |
20218651 |
aaaacatgaagttctgcaaaaaataccaggaatacatgcaaggccaggagcagaagaaacttcctgaggttggattcaagaagctcaaaaaaatcttgaa |
20218552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 44303163 - 44303064
Alignment:
| Q |
38 |
aaaagatgaagttctgcaagacctatcaggaatacatgcaagctcaggagcagaagaagctccctgttgtgggattcaagaagctcaaaaagatcatgaa |
137 |
Q |
| |
|
|||| |||||||||||||| | || |||||||||||||||| |||||||||||||| || |||| || |||||||||||||||||||| ||| |||| |
|
|
| T |
44303163 |
aaaacatgaagttctgcaaaaaataccaggaatacatgcaaggccaggagcagaagaaacttcctgaggttggattcaagaagctcaaaaaaatcttgaa |
44303064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University