View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_high_5 (Length: 411)
Name: NF3051_high_5
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_high_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 21376616 - 21376223
Alignment:
| Q |
18 |
ccactttaagggcatttttagctttgataattgaggaccaaattggagagttgttcgaattattagttgcttgaaggatgttatgaccaaccacatattt |
117 |
Q |
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| T |
21376616 |
ccactttaagggcatttttagctttgataattgaggaccaaattggagagttgttcgaattattagttgcttgaaggatgttatgaccaaccacatattt |
21376517 |
T |
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| Q |
118 |
gttagagaggatactgacccaaagtttttcagatgattggatcaaatcccaaacaagctttccaagaaggcaagtattcaattccctggctctcctgatt |
217 |
Q |
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| T |
21376516 |
gttagagaggatactgacccaaagtttttcagatgattggatcaaatcccaaacaagctttccaagaaggcaagtattcaattccctggctctcctgatt |
21376417 |
T |
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| Q |
218 |
caaaggccaccaagagtcatgggacgggtagttttttccaacctaccagataaatgcctttatcatttgaacctttccagatgaaattcctggttgtttg |
317 |
Q |
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| T |
21376416 |
caaaggccaccaagagtcatgggacgggtagttttttccaacctaccagatgaatgcctttatcatttgaacctttccagatgaaattcctggttgtttg |
21376317 |
T |
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| Q |
318 |
atcaatgcgactacaaattgattgaggaagccaaaaaatttccatataatatggaggaatagaggagagaacagaggagaaaagagtcattctt |
411 |
Q |
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| T |
21376316 |
atcaatgcgattacaaattgattgaggaagccaaaaaaattccatataatatggaggaatagaggagagaacagaggaggcaagagtcattctt |
21376223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 324
Target Start/End: Original strand, 1353140 - 1353292
Alignment:
| Q |
173 |
agctttccaagaaggcaagtattcaattccctggctctcctgattcaaaggccaccaagagtcatgggacgggtagt-tttttccaacctaccagataaa |
271 |
Q |
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| T |
1353140 |
agctttcctaaaaggcaagtattcgcctccctagctgatctgattccaaggccaccaagagatttaggacgagaaatctttttccaacctactaaatgaa |
1353239 |
T |
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| Q |
272 |
tgcctttatcatttgaacctttccagatgaaattcctggttgtttgatcaatg |
324 |
Q |
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| T |
1353240 |
tgcttttatcatttgtacttctctaaatgaaatttctagttgtttgatcaatg |
1353292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 350
Target Start/End: Original strand, 35062546 - 35062642
Alignment:
| Q |
254 |
tccaacctaccagataaatgcctttatcatttgaacctttccagatgaaattcctggttgtttgatcaatgcgactacaaattgattgaggaagcca |
350 |
Q |
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| T |
35062546 |
tccaacctaccagatggatacctttgtcatttgagcctctctaaattaaatttctggttgttttatcaatgctatcacaaattgattggagaagcca |
35062642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 383
Target Start/End: Original strand, 6640479 - 6640573
Alignment:
| Q |
289 |
cctttccagatgaaattcctggttgtttgatcaatgcgactacaaattgattgaggaagccaaaaaatttccatataatatggaggaatagagga |
383 |
Q |
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| T |
6640479 |
cctttccagatgaaattgcgggttgtttgatcaatactatcacaaatattttgaggaagccaattaatctgcatatagtatgtaggaatggagga |
6640573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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