View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_low_10 (Length: 273)
Name: NF3051_low_10
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_low_10 |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 36306830 - 36306566
Alignment:
| Q |
18 |
tgatctaacccgtaagtagatgacttatatccatcaaagtcgtgagttcaaca---------gatgtgataatttataattctttgaannnnnnnnnnnn |
108 |
Q |
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| T |
36306830 |
tgatctaacccgtaagtagatgacttatatccatcaaagtcgtgagttcaactcttacacaggatgtgataatttataattctttgaatttttctttttt |
36306731 |
T |
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| Q |
109 |
atgatggaattctttgaaatatttattagctatgtatgcaatagaataatagcagaattcacatatctgtattttttcaactgtccatatatctaaatgt |
208 |
Q |
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| T |
36306730 |
atgatggaattctttgaaatatttattagctatgtatgcaatagaataatagcagaattcacatgtctgtattttttcaactgtccatatatctaaatgt |
36306631 |
T |
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| Q |
209 |
acaacaaaagcagaatttctgagtacaaacacttcctttacttcacatttatactcaaattctca |
273 |
Q |
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| T |
36306630 |
acaacaaaagcaaaatttctgagtacaaacactttatttacttcacatttatactcaaattctca |
36306566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 273
Target Start/End: Complemental strand, 36322104 - 36321954
Alignment:
| Q |
122 |
ttgaaatatttattagctatgtatgcaatagaataatagcagaattcacatatctgtattttttcaactgtccatatatctaaatgtacaacaaaagcag |
221 |
Q |
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| T |
36322104 |
ttgaaatatttatgaactatgtatgcagcataataatatcggcattcacatgaatgcattattttaattgtc-atgtatctaaatgtacaacaaaagcag |
36322006 |
T |
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| Q |
222 |
aatttctgagtacaaacacttcctttacttcacatttatactcaaattctca |
273 |
Q |
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| T |
36322005 |
aatttctgagtacagacacattatttatttcacatttatactcaaattctca |
36321954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 122 - 273
Target Start/End: Complemental strand, 30784345 - 30784195
Alignment:
| Q |
122 |
ttgaaatatttattagctatgtatgcaatagaataatagcagaattcacatatctgtattttttcaactgtccatatatctaaatgtacaacaaaagcag |
221 |
Q |
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||||||||||||| | ||||||||||| | ||||||| ||| ||||||||||||| ||| |||||| |||| || ||||| ||| |||||||||||||| |
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| T |
30784345 |
ttgaaatatttatgaactatgtatgcagcataataatatcagcattcacatatctgcattatttcaattgtc-atgtatctgaatctacaacaaaagcag |
30784247 |
T |
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| Q |
222 |
aatttctgagtacaaacacttcctttacttcacatttatactcaaattctca |
273 |
Q |
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| T |
30784246 |
aatttctgagtacagacacattatttatttcacatttatactcaaattctca |
30784195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 273
Target Start/End: Complemental strand, 45628192 - 45628042
Alignment:
| Q |
122 |
ttgaaatatttattagctatgtatgcaatagaataatagcagaattcacatatctgtattttttcaactgtccatatatctaaatgtacaacaaaagcag |
221 |
Q |
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||||||||||||| | ||||||||||| | ||||||| ||| |||||||||||| ||| |||||| |||| || ||||| ||||||||||||||||| |
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| T |
45628192 |
ttgaaatatttatgaactatgtatgcagcataataataccagcattcacatatctccattatttcaattgtc-atgtatctgaatgtacaacaaaagcat |
45628094 |
T |
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| Q |
222 |
aatttctgagtacaaacacttcctttacttcacatttatactcaaattctca |
273 |
Q |
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||||||| |||||| |||| | ||| |||||||||||||||||||||||| |
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| T |
45628093 |
aatttctcagtacagacacattttttgtttcacatttatactcaaattctca |
45628042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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