View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3051_low_13 (Length: 257)
Name: NF3051_low_13
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_low_13 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 33763304 - 33763549
Alignment:
| Q |
12 |
gagagagatgaatttggaaatgtcacatcaacattaaacaaccacatgaacactttttcaatagagttggatgaaaagagggtaatggtaccgatatttt |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33763304 |
gagagaaatgaatttggaaatgtcacatcaacattaaacaaccaaatgaacactttttcaatagagttggatgaaaagagggtgatggtaccgatatttt |
33763403 |
T |
|
| Q |
112 |
ataacttacatgaacgatttgttttggnnnnnnnnctttaaagtactaaattcttacaaacatctaaaggaaaaataatactttcaataagaacaaacaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33763404 |
ataacttacatgaacgatttgttttggaaaaaaaactttaaagtactaaattcttacaaacatctaaaggaaaaataatactttcaataagaacaaacaa |
33763503 |
T |
|
| Q |
212 |
atgaaatcaataactaatgttttcaaacaaaataaaaagaaagtga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33763504 |
atgaaatcaataactaatgttttcaaacaaaataaaaagaaagtga |
33763549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University