View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_low_17 (Length: 238)
Name: NF3051_low_17
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43395984 - 43395765
Alignment:
| Q |
1 |
tctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttccaaccttcacacgaactgcagatatctctttgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43395984 |
tctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttccaaccttcacacgaactgcagatatctctttgcaa |
43395885 |
T |
|
| Q |
101 |
attgtcaaagtagagattgcaattttttgggccaccgactccagaaggttttgaggtgttccttccataacttccttagctatactgcatcattaacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43395884 |
attgtcaaagtagagattgcaattttttgggccatcgactccagaaggttttgaggtgttccttccacaacttccttagctatactgcatcattaacctt |
43395785 |
T |
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| Q |
201 |
ggttaaattacagtaaccaa |
220 |
Q |
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|||||||||||||||||||| |
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| T |
43395784 |
ggttaaattacagtaaccaa |
43395765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 43400125 - 43399934
Alignment:
| Q |
1 |
tctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttccaaccttcacacgaactgcagatatctctttgcaa |
100 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |||| | ||||||||||||||||| |||||||||||| ||||||||||||||| | |
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| T |
43400125 |
tctgcgtctcagaatctcaacgcccaagtaatcaaccggaccctgaatagccacatgaggctttccaatcttcacacgaacagcagatatctctttgtga |
43400026 |
T |
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| Q |
101 |
attgtcaaagtagagattgcaattttttgggccaccgactccagaaggttttgaggtgttccttccataacttccttagctatactgcatca |
192 |
Q |
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|| |||||||||||||||||||||||||||||||| || |||||||||||| ||| || |||||| ||||||||||||||||| |||||||| |
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| T |
43400025 |
atagtcaaagtagagattgcaattttttgggccactgattccagaaggtttagagctggtccttcaataacttccttagctatgctgcatca |
43399934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 37410404 - 37410587
Alignment:
| Q |
1 |
tctgcgtctcagaatctcaacgcctaagtaatcaaccggacctagaatcggcacatgaggctttccaaccttcacacgaactgcagatatctctttgcaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | |||||| |||||| | |
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| T |
37410404 |
tctgcgtctcagaatctcaacacctaagtaatcaaccggaccctgaatcgccacatgaggctttccaaccttcacacgaacagtagatatttctttgtga |
37410503 |
T |
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| Q |
101 |
attgtcaaagtagagattgcaattttttgggccaccgactccagaaggttttgaggtgttccttccataacttccttagctata |
184 |
Q |
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| | |||||||| |||||||||||| |||||||| |||||||||||||| |||| || |||||| ||||||| |||||||||| |
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| T |
37410504 |
acttccaaagtagcgattgcaattttatgggccactgactccagaaggttgtgagctggtccttcaataactttcttagctata |
37410587 |
T |
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