View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_low_22 (Length: 220)
Name: NF3051_low_22
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 27573782 - 27573954
Alignment:
| Q |
35 |
ccctgaatcctataaattggattcaattcattgcctccacaattttgaaaccctctttgtaagcaccgtccataattcctattttatttaattgaagaag |
134 |
Q |
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| T |
27573782 |
ccctgaatcctataaattggattcaattcattgcctccacaattttgaaaccctctttgtaagcaccgtccataattcctattttatttaatagaagaag |
27573881 |
T |
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| Q |
135 |
agtgatggaaaacgaagagaagggaagaaaaccaagaattttgtgtcttcatggatttcgaacaagtggagag |
207 |
Q |
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| T |
27573882 |
agtgatggaaaacgaagagaagggaagaaaaccaagaattttgtgtcttcatggatttcgaacaagtggagag |
27573954 |
T |
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Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 13118625 - 13118712
Alignment:
| Q |
120 |
atttaattgaagaagagtgatggaaaacgaagagaagggaagaaaaccaagaattttgtgtcttcatggatttcgaacaagtggagag |
207 |
Q |
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| T |
13118625 |
atttaattgaagaagagagatggaaaacgaagagaaggtaagaaaaccaaaaattttgtgtcttcatgggtttcgaacaagtggagag |
13118712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 13118373 - 13118417
Alignment:
| Q |
82 |
aaaccctctttgtaagcaccgtccataattcctattttatttaat |
126 |
Q |
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| T |
13118373 |
aaaccctctttgtaagcaccgcccataatttctaattaatttaat |
13118417 |
T |
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