View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_low_6 (Length: 405)
Name: NF3051_low_6
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 5137945 - 5138334
Alignment:
| Q |
1 |
ttccttaaagaaaatgtctacagtaatgacttaagaatcaatnnnnnnn-----caagcatatctaattaaaattgcataaaaaag-ctacctttctgaa |
94 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5137945 |
ttccttaaaaaaaatgtctacagtaatgacttaaaaatcaataaaaaaaaaaaacaagcatatctaattaaaattgcataaaaaaaactacctttctgaa |
5138044 |
T |
|
| Q |
95 |
acatgctcacatcactagctgaattggcaactttaaagtgtgaccaattaagcacatcaacttcaaagtctccatttttatgcaactccagaaaagggtg |
194 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5138045 |
acatgctcgcatcactagctgaattggcaactttaaagtgtgaccaattaagcacatcaacttcaaagtctccatttttatgcaactccagaaaagggtg |
5138144 |
T |
|
| Q |
195 |
ttcttcaaaacgcgaactttcatcaccttcagctggcaaagttgaaattctgacagtgtcattcaacgatacagaacgaccctttgaactgaaactactt |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5138145 |
ttcttcaaaacgcgaactttcatcaccttcagctggcaaagttgaaattttgacagtgtcattcaacgatacagaacgaccctttgaactgaaactactt |
5138244 |
T |
|
| Q |
295 |
tgtcgaaaagaatcaagcaaagaactaaaagggtcatcatgattctcggaactggaagagggttttggtgaagaagagcgattgagagtg |
384 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5138245 |
tgtcgaaaagaatcaagcaaagaactaaaagggtcatcatgattctcagaactggaagagggttttggtgaagaagagcgattgagagtg |
5138334 |
T |
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