View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3051_low_7 (Length: 340)
Name: NF3051_low_7
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3051_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 7495367 - 7495588
Alignment:
| Q |
5 |
gggattgtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatgatagttaaaggatga |
104 |
Q |
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| T |
7495367 |
gggatagtaatatgtattctctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcgtgatgatagttaaaggatga |
7495466 |
T |
|
| Q |
105 |
ggatgttgagtaggggtacataatttagtacttagattataaacttctgcgaaggaaatataatgtttcgttgtcacagagcaataattgatatgaaatt |
204 |
Q |
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| T |
7495467 |
ggatgttgagtaggggtccataatttagtacttagattataaacttccgcgaaggaaatataatgtttcattgtcacagagcaataattgatatgaaatt |
7495566 |
T |
|
| Q |
205 |
tcacagctttgaagttgatgtt |
226 |
Q |
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|||||||||||||||||||||| |
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| T |
7495567 |
tcacagctttgaagttgatgtt |
7495588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 203 - 309
Target Start/End: Original strand, 7488081 - 7488187
Alignment:
| Q |
203 |
tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccatacatgcgtgagtcgttgtcaaggcagagactcggaggaacacggtggacc |
302 |
Q |
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| T |
7488081 |
tttcacaactttgaagttgatgttgttgggatcatcggcaccgaaaccatacatgcatgagtcgttatcaaggcagagactcggaggaacacggtggacc |
7488180 |
T |
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| Q |
303 |
tctctag |
309 |
Q |
| |
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||||||| |
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| T |
7488181 |
tctctag |
7488187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 6944130 - 6944002
Alignment:
| Q |
26 |
tgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatgatagttaa---aggatgaggatgttgagtaggggta |
122 |
Q |
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| T |
6944130 |
tgtaatccaatgataaacgccgttaacaagagtgttatatttgaagggacattgacgtgtgatgatagtaaaaggaggaggaggatgtcgggtaggggtc |
6944031 |
T |
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| Q |
123 |
cataatttagtacttagattataaacttc |
151 |
Q |
| |
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||| ||||||| ||||| |||||||||| |
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| T |
6944030 |
catgatttagtgattagactataaacttc |
6944002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 7475040 - 7475264
Alignment:
| Q |
26 |
tgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggacgttgacgcatgatgatagttaaaggatgaggatgttgagtaggggtacat |
125 |
Q |
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| T |
7475040 |
tgtaatccaatgataaatgccgttaacaagattgttatatttggagggaatttttcgtgtgatgatagtaaaaggaggagcatgtagggtaggagtccat |
7475139 |
T |
|
| Q |
126 |
aatttagtacttagattataaacttctgcgaaggaaatataatgtttcgttgtcacagagcaataattgatatgaaatttcacagctttgaagttgatgt |
225 |
Q |
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| T |
7475140 |
gatttagtacctagactataaacttccgcccatgaaatataatgtttc-ttctc-----gtaatacttgacatggagtttcacaactttgaaatcaatga |
7475233 |
T |
|
| Q |
226 |
tgtttggatcatcagcaccgaaaccatacat |
256 |
Q |
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||||||||||||| ||||| ||||||||||| |
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| T |
7475234 |
tgtttggatcatctgcaccaaaaccatacat |
7475264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 7873426 - 7873375
Alignment:
| Q |
24 |
tctgtaatccaatgataaacaccattaacaagagtgttgtatttagaaggac |
75 |
Q |
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| T |
7873426 |
tctgtaatccaatgataaacgccgttaacaagagtgttatatctagaaggac |
7873375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 13877808 - 13877850
Alignment:
| Q |
25 |
ctgtaatccaatgataaacaccattaacaagagtgttgtattt |
67 |
Q |
| |
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| T |
13877808 |
ctgtaatccaatgataaatgccattaacaagaatgttgtattt |
13877850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 669281 - 669249
Alignment:
| Q |
32 |
ccaatgataaacaccattaacaagagtgttgta |
64 |
Q |
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| T |
669281 |
ccaatgataaacaccattaacaagagtattgta |
669249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 6943950 - 6943898
Alignment:
| Q |
203 |
tttcacagctttgaagttgatgttgtttggatcatcagcaccgaaaccataca |
255 |
Q |
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||||||| ||||||| | |||| |||| | ||||||||||||||||||||||| |
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| T |
6943950 |
tttcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca |
6943898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 31103692 - 31103731
Alignment:
| Q |
26 |
tgtaatccaatgataaacaccattaacaagagtgttgtat |
65 |
Q |
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||||||||||| ||||||||| |||||||||||||||||| |
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| T |
31103692 |
tgtaatccaataataaacaccgttaacaagagtgttgtat |
31103731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 31097139 - 31097177
Alignment:
| Q |
27 |
gtaatccaatgataaacaccattaacaagagtgttgtat |
65 |
Q |
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| T |
31097139 |
gtaatccaatgataaacaccgttagcaagagtgttgtat |
31097177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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