View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3051_low_8 (Length: 307)

Name: NF3051_low_8
Description: NF3051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3051_low_8
NF3051_low_8
[»] chr3 (9 HSPs)
chr3 (9-288)||(23235427-23235706)
chr3 (17-288)||(23231543-23231814)
chr3 (147-256)||(23240162-23240271)
chr3 (178-288)||(23196229-23196339)
chr3 (205-275)||(23226400-23226470)
chr3 (30-107)||(23196401-23196478)
chr3 (15-77)||(23240057-23240119)
chr3 (191-272)||(7398866-7398947)
chr3 (182-287)||(9609046-9609151)
[»] chr6 (3 HSPs)
chr6 (181-287)||(19118274-19118380)
chr6 (181-287)||(19125583-19125689)
chr6 (214-281)||(17367595-17367662)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 23235427 - 23235706
Alignment:
Q  9 gataatactgtatagtgggtaaaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaatggagcgactttggtgaaaaatggagcgaagc 108  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||    
T  23235427 gataatactgtatagtgggtcaaaaagatagtgtagttgggtgggtttaaccgttacagagttaaaaatggagcgacttcggtgaaaaatggagtgaagc 23235526  T
Q  109 cggtaaaagactagtgttggcttcctattaatagtatcatcaaagtaggttaagacgaggttgccgctggtggttgataagcgaaggtgtttcttagcga 208  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23235527 cggtaaaagactagtgttggcttcctatcaatagtatcatcaaagtaggttaagatgaggttgcggctggtggttgataagcgaaggtgtttcttagcga 23235626  T
Q  209 aattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23235627 aattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcat 23235706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 23231543 - 23231814
Alignment:
Q  17 tgtatagtgggtaaaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaatggagcgactttggtgaaaaatggagcgaagccggtaaaa 116  Q
    |||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||    |||||||||||||| |||||||||||||    
T  23231543 tgtatagtggatcaaaaggatagtgtagttgggtcggtttaactgttacagagttaaaaatggagcgaagcgggtgaaaaatggagtgaagccggtaaaa 23231642  T
Q  117 gactagtgttggcttcctattaatagtatcatcaaagtaggttaagacgaggttgccgctggtggttgataagcgaaggtgtttcttagcgaaattggga 216  Q
    || ||| |||| |||| ||| |  ||||||||||||||||||||||| |||||||| || |||| |||||||||||||||||||||| ||||||||||||    
T  23231643 gattagcgttgacttcatatcataagtatcatcaaagtaggttaagatgaggttgcggcgggtgattgataagcgaaggtgtttctttgcgaaattggga 23231742  T
Q  217 tcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaagtctgcat 288  Q
    ||||| || ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  23231743 tcagagattagggtattgaaggacttactgagacatcgaagttgtaggaggagcttgacaggaagtctgcat 23231814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 256
Target Start/End: Original strand, 23240162 - 23240271
Alignment:
Q  147 atcaaagtaggttaagacgaggttgccgctggtggttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttacta 246  Q
    ||||||||||||||||| ||||||||  | |||||||||||||||||||||||||||| ||||||  ||||||||||| ||| ||||||||||||||||     
T  23240162 atcaaagtaggttaagatgaggttgcttcgggtggttgataagcgaaggtgtttcttaacgaaataaggatcagaaattagggtattgaaggacttactg 23240261  T
Q  247 aggcatcgaa 256  Q
    ||||||||||    
T  23240262 aggcatcgaa 23240271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 23196339 - 23196229
Alignment:
Q  178 gtggttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacag 277  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| ||| |||||||| ||||||| |||||||| ||||||||||||| | ||||||    
T  23196339 gtggttgataagcgaaggtgtttcttagcgaactttggatcagaaataagggtattgaagaacttactgaggcatcgtagttgtaggaggaacatgacag 23196240  T
Q  278 gaagtctgcat 288  Q
    | || ||||||    
T  23196239 ggagcctgcat 23196229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 275
Target Start/End: Original strand, 23226400 - 23226470
Alignment:
Q  205 gcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgac 275  Q
    |||||| ||||||||||||| ||| |||| ||||||| ||| || ||||||||||||| ||||| ||||||    
T  23226400 gcgaaagtgggatcagaaattaggatattcaaggactaactgagacatcgaagttgtaagaggatcttgac 23226470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 23196478 - 23196401
Alignment:
Q  30 aaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaatggagcgactttggtgaaaaatggagcgaag 107  Q
    |||||||||| ||| |||||| |||||||| |||||||| |||||||||||   || |||||||||| ||||| ||||    
T  23196478 aaaaggatagcgtatttgggtaggtttaacggttacagagttaaaaatggaatcacattggtgaaaagtggagtgaag 23196401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 23240057 - 23240119
Alignment:
Q  15 actgtatagtgggtaaaaaggatagtgtagttgggtcggtttaaccgttacagaattaaaaat 77  Q
    |||||||| ||||| |||||||||||| |||||| | |||||||| ||| |||| ||||||||    
T  23240057 actgtatattgggtcaaaaggatagtgcagttggatgggtttaactgttgcagagttaaaaat 23240119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 7398866 - 7398947
Alignment:
Q  191 gaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagctt 272  Q
    ||||||||||||| |  || |||| |||||| || ||| |||||||| ||||||  |||||||||||||| ||||| |||||    
T  7398866 gaaggtgtttctttgtaaatttggaatcagagataagggtattgaagaacttacagaggcatcgaagttgaaggagaagctt 7398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 287
Target Start/End: Original strand, 9609046 - 9609151
Alignment:
Q  182 ttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaag 281  Q
    ||||||| |||||||| ||||| ||||| || ||||| ||||| |||| ||||||||| || | |||||| ||||| || |  || ||||| || |||||    
T  9609046 ttgataaacgaaggtgcttcttggcgaatttcggatctgaaattaggtaattgaaggatttgccaaggcaccgaagctgcactagtagctttaccggaag 9609145  T
Q  282 tctgca 287  Q
    ||||||    
T  9609146 tctgca 9609151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 19118380 - 19118274
Alignment:
Q  181 gttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaa 280  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||| ||| |||||| |||||||||  | ||||||||||||| ||||||||| || ||||    
T  19118380 gttgataggcgaaggtgtttctttgcgaatttgggatcggaaattagggtattgagggacttactttgacatcgaagttgtatgaggagcttcacgggaa 19118281  T
Q  281 gtctgca 287  Q
    | |||||    
T  19118280 gcctgca 19118274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 287
Target Start/End: Complemental strand, 19125689 - 19125583
Alignment:
Q  181 gttgataagcgaaggtgtttcttagcgaaattgggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaa 280  Q
    ||||||| |||||||||||||||  ||||  ||||||||||||| ||| |||||| |||||||||  | ||||||||||||| ||||||||| || ||||    
T  19125689 gttgataggcgaaggtgtttcttcacgaagatgggatcagaaattagggtattgagggacttactctgacatcgaagttgtacgaggagcttcacgggaa 19125590  T
Q  281 gtctgca 287  Q
    | |||||    
T  19125589 gcctgca 19125583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 17367662 - 17367595
Alignment:
Q  214 ggatcagaaatcaggttattgaaggacttactaaggcatcgaagttgtaggaggagcttgacaggaag 281  Q
    ||||||||||| |||| |||||| |||||||| |  ||||||||||||| |||||||||||| |||||    
T  17367662 ggatcagaaattaggtcattgaaagacttacttaaacatcgaagttgtatgaggagcttgacgggaag 17367595  T

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