View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_high_14 (Length: 309)
Name: NF3052_high_14
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 51268407 - 51268126
Alignment:
| Q |
18 |
gtaatctgattaattgatgttattacgtgatttaggatcttgttcttcgacttgatgtatttaaaaagctcgacaagcacagaggctgtgtcaacactgt |
117 |
Q |
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| T |
51268407 |
gtaatctgattaattgatgttattacgtgatttaggatcttgttcttcgacttgatgtatttaaaaagctcgacaagcacagaggctgtgtcaacactgt |
51268308 |
T |
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| Q |
118 |
atgcttcaatgcagatggtgacattctgctttcaggttctgatgacaggaggattattctctgggattgggaaaccggccgtgttaagctctccttccat |
217 |
Q |
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| T |
51268307 |
atgcttcaatgcagatggtgacattctgctttcaggttctgatgacaggaggattattctctgggattgggaaaccggccgtgttaagctctccttccat |
51268208 |
T |
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| Q |
218 |
tccggtcatagtaacaatgttttccaggcgaagttcatgcctcactcctatgatcgtagcattgtcacttgtgctgatgatg |
299 |
Q |
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| T |
51268207 |
tccggtcatagtaacaatgttttccaggcgaagttcatgtctcactcctatgatcgtagcattgtcacttgtgctgctgatg |
51268126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 6847337 - 6847179
Alignment:
| Q |
20 |
aatctgattaattgatgttattacgtgatttaggatcttgttcttcgacttgatgtatttaaaaagctcgacaagcacagaggctgtgtc-aacactgta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| ||| |||||| |||| ||| |
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| T |
6847337 |
aatctgattaattgatgttattacgtgatttaggatctagtccttcgacttgatgtattcaaaaagctcgaaaagcacaaaggttgtgtctaacaaggta |
6847238 |
T |
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| Q |
119 |
tgcttcaatgcagatggtgacattctgctttcaggttctgatgacaggaggattattct |
177 |
Q |
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| T |
6847237 |
ttcttcaatgtagatggtgacattctactttcaagttctgatgatatgaggattattct |
6847179 |
T |
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