View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_high_17 (Length: 283)
Name: NF3052_high_17
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 35 - 275
Target Start/End: Complemental strand, 10370533 - 10370293
Alignment:
| Q |
35 |
aatttgtaaatgtgtgttacatgattttggaacattattannnnnnnnaatttcattttgtagtttttattgagaataggaaaatcaagttgaaatgtga |
134 |
Q |
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| T |
10370533 |
aatttgtaaatgtgtgttacatgattttggaacattatttttttttttaatttcattttgtagtttttattgagaataggaaaatcaagttgaaatgtga |
10370434 |
T |
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| Q |
135 |
taagcattaatgctgtattagtttgagttgaattgcaactgtgatgggtaatgctttgttttaagcaactagaactcactttattccaaacttttgtaaa |
234 |
Q |
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| T |
10370433 |
taagcattaatgctgtattagtttgagttgaattgcaactgtgatgggtaatgctttgttttaagcaactagaactccctttattccaaacatttgtaaa |
10370334 |
T |
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| Q |
235 |
tcatttcagttttttgcataagaactgtcctttcgcctatg |
275 |
Q |
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| T |
10370333 |
tcatttcagttttttgcataagaactgtcctttcgcctatg |
10370293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 204
Target Start/End: Complemental strand, 10350827 - 10350697
Alignment:
| Q |
83 |
aatttcattttgtagtttttattg-agaataggaaaatcaagttgaaa--------tgtgataagcattaatgctgtattagtttgagttgaattgcaac |
173 |
Q |
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| T |
10350827 |
aatttcattttgtagttttttttttagaattggaaaatcaagttgaaagagaatactgtgataagcattagtattccattactttgagttgaattgcaac |
10350728 |
T |
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| Q |
174 |
tgtgatgggtaatgctttgttttaagcaact |
204 |
Q |
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| T |
10350727 |
tgtgatgggtgatactaagttttaagcaact |
10350697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 10346250 - 10346208
Alignment:
| Q |
162 |
ttgaattgcaactgtgatgggtaatgctttgttttaagcaact |
204 |
Q |
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| T |
10346250 |
ttgaattgcaactgtgatgggtaatgcttcgttttaagcaact |
10346208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 10350608 - 10350558
Alignment:
| Q |
225 |
cttttgtaaatcatttcagttttttgcataagaactgtcctttcgcctatg |
275 |
Q |
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| T |
10350608 |
cttttgtaaatcatttcaattttttgcaaaagaactgtccgttcgcctatg |
10350558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 10340042 - 10339996
Alignment:
| Q |
83 |
aatttcattttgtagtttttattgagaataggaaaatcaagttgaaa |
129 |
Q |
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| T |
10340042 |
aatttcattttgtagtttttattttgaataggaagatcaagttgaaa |
10339996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 10346291 - 10346253
Alignment:
| Q |
83 |
aatttcattttgtagtttttattgagaataggaaaatca |
121 |
Q |
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| T |
10346291 |
aatttctttttgtagtttttattgagaataggaagatca |
10346253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 26573587 - 26573416
Alignment:
| Q |
35 |
aatttgtaaatgtgtgttacatgattttggaacattattannnnnnnnaatttcattttgtagtttttattgagaataggaaaatcaagttgaaa----- |
129 |
Q |
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| T |
26573587 |
aatttggaaatgtgtgttgcatgattttggaacattttt-----ttttaatttcattttgtagtttttattgagaattggaaaatcaagttgaaagatat |
26573493 |
T |
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| Q |
130 |
--tgtgataagcattaatgctgtattagtttgagttgaattgcaactgtgatgggtaatgctttgttttaagcaact |
204 |
Q |
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| T |
26573492 |
actgtgataagcattagttttgcattactttgagttgaattgcaactgtgatgggtaatgcttcgttttaagcaact |
26573416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 26573323 - 26573271
Alignment:
| Q |
225 |
cttttgtaaatcatttcagtttttt--gcataagaactgtcctttcgcctatg |
275 |
Q |
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| T |
26573323 |
cttttgtaaatcatttcatttttttttgcaaaagaactgtcctttcgcctatg |
26573271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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