View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_high_18 (Length: 251)
Name: NF3052_high_18
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_high_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 41876042 - 41876280
Alignment:
| Q |
13 |
aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttt |
112 |
Q |
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| T |
41876042 |
aatatgttatagggaactgtgacttgcttttgctaagcattgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttt |
41876141 |
T |
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| Q |
113 |
tggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttcttatttttatgttaatccatcaaccaaatgttttaaaattttcataa |
212 |
Q |
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| T |
41876142 |
tggaacaagcccctcagattgatactcttgtagtacctataagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataa |
41876241 |
T |
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| Q |
213 |
attttagtattctcatctcgattttccaacaaaatgaaa |
251 |
Q |
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| T |
41876242 |
attttagtattctcttctcgattttccaacaaaatgaaa |
41876280 |
T |
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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 245
Target Start/End: Complemental strand, 40867984 - 40867791
Alignment:
| Q |
53 |
tgctctttgacatgtttagttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtacctat |
152 |
Q |
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| T |
40867984 |
tgctctttgacatgtttgtttgatcttgcagtggccagggtaccatatccttggagcttctggaacaagcccctcaactagatacacttgtggtaccaat |
40867885 |
T |
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| Q |
153 |
aagtggtttgttcttatttttatgttaatccatcaacc-aaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaa |
245 |
Q |
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| T |
40867884 |
aagtggtttgtttgctttttgatgtcaaaccatcatccaaaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaacaaa |
40867791 |
T |
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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 24800695 - 24800505
Alignment:
| Q |
52 |
ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac |
148 |
Q |
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| T |
24800695 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24800596 |
T |
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| Q |
149 |
ctataagtggtttgt--tcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgatttt |
237 |
Q |
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| T |
24800595 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgatttt |
24800505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 24817771 - 24817581
Alignment:
| Q |
52 |
ttgctctttgacatgttta---gttgatcttgcagtggccaaggtaccatatccttggagcttttggaacaagcccctcagattgatactcttgtagtac |
148 |
Q |
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| T |
24817771 |
ttgctctttgacatgtttgctggttgatcttatagtggccaaggtaccatatccttggagtttcttgaacaaatccctcaaatcgatacacttgtagtac |
24817672 |
T |
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| Q |
149 |
ctataagtggtttgt--tcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgatttt |
237 |
Q |
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| T |
24817671 |
caataagtggtttgttctctcttttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgatttt |
24817581 |
T |
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