View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_high_22 (Length: 237)
Name: NF3052_high_22
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_high_22 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 37327196 - 37326962
Alignment:
| Q |
1 |
cttataattaggacaaatggagtataaatgactacttgatgaaataggcttccaatctattaggtttgatactatgataatcacatacaggagaataact |
100 |
Q |
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| T |
37327196 |
cttataattaggacaaatggagtataaatgactacttgatgaaataggcttccaatctattaggtttgatactatgataatcacatacaggagaataact |
37327097 |
T |
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| Q |
101 |
taattataagtttaatagtacctgctaatgtattaagtagtgtagacttgccacagccagaaggacccattatggccaagagttgaccaggtttagcata |
200 |
Q |
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| T |
37327096 |
taatta--agtttaatagtacctgctaatgtatcaagtagtgtagacttgccacagccagaaggacccattatggccaagagttgaccaggtttagcata |
37326999 |
T |
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| Q |
201 |
accagttaatccttgaagaattgatttgcttccattc |
237 |
Q |
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| T |
37326998 |
accagttaatccttgaagaattgatttgcttccattc |
37326962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 37315550 - 37315409
Alignment:
| Q |
94 |
aataacttaattataagtttaatagtacctgctaatgtattaagtagtgtagacttgccacagccagaaggacccattatggccaagagttgaccaggtt |
193 |
Q |
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| T |
37315550 |
aataacttaatta--agtttattagtacctgctaatgtatcaagtagtgtagacttgccacagccagaaggacccattatggccaagagttgaccaggtt |
37315453 |
T |
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| Q |
194 |
tagcataaccagttaatccttgaagaattgatttgcttccattc |
237 |
Q |
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| T |
37315452 |
tagcataaccagttaatccttgaagaattgatttgcttccattc |
37315409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 237
Target Start/End: Original strand, 19554239 - 19554368
Alignment:
| Q |
108 |
aagtttaatagtacctgctaatgtattaagtagtgtagacttgccacagccagaaggacccattatggccaagagttgaccaggtttagcataaccagtt |
207 |
Q |
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| T |
19554239 |
aagtttaatagtacctgctaaagtatcaagtagtgtagacttgccacagccagaagggcccattatggccaaaagttgacctggcttaacataacctgtt |
19554338 |
T |
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| Q |
208 |
aatccttgaagaattgatttgcttccattc |
237 |
Q |
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| T |
19554339 |
agtccgtgaagaattgatctgcttccattc |
19554368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 37347941 - 37348058
Alignment:
| Q |
119 |
tacctgctaatgtattaagtagtgtagacttgccacagccagaaggacccattatggccaagagttgaccaggtttagcataaccagttaatccttgaag |
218 |
Q |
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| T |
37347941 |
tacctgctaaagcatcaagaagtgtagattttccacaaccagaaggacccataatagccaaaagctgagctggttttgcataaccagttagaccctgaag |
37348040 |
T |
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| Q |
219 |
aattgatttgcttccatt |
236 |
Q |
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| T |
37348041 |
aattgatttgctttcatt |
37348058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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