View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_high_4 (Length: 511)

Name: NF3052_high_4
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_high_4
NF3052_high_4
[»] chr3 (27 HSPs)
chr3 (12-490)||(41985589-41986070)
chr3 (22-419)||(41980825-41981228)
chr3 (14-153)||(9494822-9494961)
chr3 (12-167)||(9407327-9407482)
chr3 (12-164)||(9425534-9425686)
chr3 (29-167)||(9343823-9343961)
chr3 (51-273)||(9448314-9448536)
chr3 (19-167)||(9329804-9329952)
chr3 (12-167)||(9617463-9617618)
chr3 (19-167)||(9336508-9336656)
chr3 (32-164)||(9655360-9655492)
chr3 (19-167)||(9695616-9695764)
chr3 (12-167)||(9397746-9397903)
chr3 (32-164)||(9646367-9646499)
chr3 (21-153)||(9352871-9353003)
chr3 (11-167)||(9432856-9433012)
chr3 (12-167)||(9416534-9416689)
chr3 (59-152)||(9340679-9340772)
chr3 (21-114)||(9377056-9377149)
chr3 (16-111)||(9614009-9614104)
chr3 (21-159)||(9626488-9626626)
chr3 (33-133)||(9441815-9441915)
chr3 (21-152)||(9347957-9348088)
chr3 (21-152)||(9369611-9369742)
chr3 (52-173)||(9756381-9756502)
chr3 (119-167)||(9686751-9686799)
chr3 (52-81)||(16011768-16011797)
[»] chr8 (3 HSPs)
chr8 (107-446)||(13170405-13170744)
chr8 (23-395)||(44688554-44688929)
chr8 (12-47)||(13170758-13170793)
[»] chr1 (8 HSPs)
chr1 (12-412)||(18991165-18991562)
chr1 (12-162)||(4428592-4428742)
chr1 (12-118)||(4439821-4439927)
chr1 (33-149)||(235195-235311)
chr1 (29-144)||(8814385-8814500)
chr1 (25-142)||(246841-246958)
chr1 (46-149)||(251412-251515)
chr1 (59-144)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (21-164)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (19-167)||(7041464-7041612)
chr6 (13-149)||(7046801-7046937)
chr6 (21-149)||(7025720-7025854)
chr6 (21-149)||(7012784-7012918)
chr6 (88-149)||(7029850-7029911)
chr6 (22-147)||(9159515-9159646)
chr6 (22-149)||(9170782-9170915)
[»] chr7 (2 HSPs)
chr7 (22-154)||(3695661-3695792)
chr7 (59-167)||(450111-450219)
[»] chr5 (2 HSPs)
chr5 (29-153)||(18571086-18571213)
chr5 (22-149)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 490
Target Start/End: Original strand, 41985589 - 41986070
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985589 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 41985688  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtca 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41985689 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccggggaaaccaaaacaatgagagtca 41985788  T
Q  212 tatatgtctactagcaacaact---cacgctcactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccg 308  Q
    ||||||||||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985789 tatatgtctactagcaacaactgatcaccctcactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccg 41985888  T
Q  309 gtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggcgt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41985889 gtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacacgcaagggatcggcgt 41985988  T
Q  409 ccaacactctttgcggcaatggaacagtagcggatggcaggcacagttcaatgtgacaagagcgagaggatttttcccatgg 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985989 ccaacactctttgcggcaatggaacagtagcggatggcaggcacagttcaatgtgacaagagcgagaggatttttcccatgg 41986070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 22 - 419
Target Start/End: Original strand, 41980825 - 41981228
Alignment:
Q  22 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 121  Q
    |||||| | ||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41980825 aaagataatacaatttcctttgacaacagacaaatttgaagcagaagcaaaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgtc 41980924  T
Q  122 aacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtcta 221  Q
    |||||||||||||||||||| |||| | |||| || ||||||||||| || |||||||||||||||||||| |||| ||||||||||| ||| ||||| |    
T  41980925 aacttgacccatttcttctctttcttagcaagcctaaacacatcaagattgaaaccatcttcaccagggaacccaacacaatgagagtgataaatgtcca 41981024  T
Q  222 ctagcaacaactcacgctcactctctaccaggaatttcatgtcc---cctccat---ccacatattcagccaataactcgacactatagtccggtccaaa 315  Q
    ||||||| || |||| |||||||||||||||||||||||  |||   |||||||   ||| ||||||||||| ||||| |||||||||||| |||||||     
T  41981025 ctagcaataattcaccctcactctctaccaggaatttcacatcccctcctccatacaccaaatattcagccactaactggacactatagtctggtccaat 41981124  T
Q  316 agcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggcgtccaacac 415  Q
     |||| |||||  |||  |||||| ||  ||||||| |  | |||||| || ||||||||| ||||  || |||||||    || ||||||||||||| |    
T  41981125 cgcaaatgtccgaccacctttattgaccacacaaaatctctttttaaatacacagatgtcttgaaaacacattgacatatggggcatcggcgtccaacgc 41981224  T
Q  416 tctt 419  Q
    ||||    
T  41981225 tctt 41981228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 153
Target Start/End: Complemental strand, 9494961 - 9494822
Alignment:
Q  14 tcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccccta 113  Q
    |||||| |||||||||||||||| ||||||  |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9494961 tcatcaataaagatgacacaattccctttggaaacgcacaaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctatccccta 9494862  T
Q  114 aactcgccaacttgacccatttcttctccttctcatcaag 153  Q
    |||||  ||| || |||||| || ||||||||||||||||    
T  9494861 aactcatcaaattcacccatctcatctccttctcatcaag 9494822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 9407327 - 9407482
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||||||| |||||| ||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| ||||||||    
T  9407327 catcatcaataaagaagacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctatcccc 9407426  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    |||||||  |||||| |||||| | || | |||||| |||||||| ||||||||||    
T  9407427 taaactcatcaacttcacccatcttttattcttctcgtcaagtctaaacacatcaa 9407482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 9425534 - 9425686
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||||||  |||||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||||| |||| ||     
T  9425534 catcatcgataaagatgacacaattccctttggcaacacacaaatccgaagctgaagcagaaaatgaacatccattcacaaagaacaaaaccctattcct 9425633  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacat 164  Q
    |||||||  |||||| |||||||| || | |||||| |||||||| |||||||    
T  9425634 taaactcatcaacttcacccattttttattcttctcgtcaagtctaaacacat 9425686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 29 - 167
Target Start/End: Original strand, 9343823 - 9343961
Alignment:
Q  29 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 128  Q
    |||||||||||| |   |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  ||||| |    
T  9343823 acacaatttcctctaggaacacacaaatccgaagcagaagcagaaaacgaacattcattccccaagaacaaaacactatcccctaaagttgttaacttca 9343922  T
Q  129 cccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    |||| ||||||||| ||||||||||  | ||||||||||    
T  9343923 cccacttcttctccatctcatcaagcttaaacacatcaa 9343961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 51 - 273
Target Start/End: Original strand, 9448314 - 9448536
Alignment:
Q  51 acaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatc 150  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| | |  ||||| ||||||||||||||||||||||     
T  9448314 acaaatccgaagcagaagcagaaaacgaacagtcattccccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcata 9448413  T
Q  151 aagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctactagcaacaactcacgctcactctctacc 250  Q
    |||  | |||||||||| | ||| | ||||   ||| |||||  | ||||||  | | ||||| ||||| ||||||||||| || | ||| || || ||     
T  9448414 aagcttaaacacatcaacccttatagcatcaggacccgggaactcgaaacaaaaacactcataaatgtccactagcaacaagtctccctctctatcaact 9448513  T
Q  251 aggaatttcatgtcccctccatc 273  Q
    | |||||| ||||||||||||||    
T  9448514 aagaattttatgtcccctccatc 9448536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 9329804 - 9329952
Alignment:
Q  19 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 118  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||| ||||||||||||||||||||||  |||| |||||| ||    
T  9329804 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaatatccattccccaagaacaaaaccttatctcctaaattc 9329903  T
Q  119 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    ||||||||||||||  | ||||| ||||||||||| || ||||||||||    
T  9329904 gccaacttgacccaccttttctctttctcatcaagcctaaacacatcaa 9329952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 167
Target Start/End: Complemental strand, 9617618 - 9617463
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||| ||| |||||||||||||||| ||||||  |||| ||||||| ||||||||||||||||| |||||||||||| | | ||||||||| ||||||||    
T  9617618 catcgtcaataaagatgacacaattccctttggaaacacacaaatctgaagcagaagcagaaaatgaacatccattcacaaggaacaaaaccctatcccc 9617519  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    |||| |   |||||| |||||||||||||| ||||||| ||  |||||||| ||||    
T  9617518 taaatttttcaacttcacccatttcttctctttctcatgaaacctgaacacttcaa 9617463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 9336508 - 9336656
Alignment:
Q  19 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 118  Q
    |||| ||||||||||||| || ||| ||| |  ||| || ||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||    
T  9336508 actatagatgacacaattcccattggcaaaacccaactcggaagcagaagcagaaaacgaacatccattccccaagaacaaaaccttatctcctaaattc 9336607  T
Q  119 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    | || |||||||||  | ||||| ||||||||||| || ||||||||||    
T  9336608 gtcagcttgacccaccttttctctttctcatcaagcctaaacacatcaa 9336656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 9655492 - 9655360
Alignment:
Q  32 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 131  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  ||||| |||||||| |||||||||||| ||  |||||| ||||    
T  9655492 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgcccaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9655393  T
Q  132 atttcttctccttctcatcaagtctgaacacat 164  Q
    |||||||||||||||||| || |||||| ||||    
T  9655392 atttcttctccttctcatgaaatctgaaaacat 9655360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 9695764 - 9695616
Alignment:
Q  19 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 118  Q
    |||| ||||||||||||| || ||  ||||| |||| || |||||||| ||||| ||||||||  | | |||||| |||||||| |||||||||||| |     
T  9695764 actatagatgacacaattcccatttgcaacacacaactctgaagcagatgcagagaacgaacagtcttcccccaaaaacaaaaccctatcccctaaattg 9695665  T
Q  119 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    | |||||||||||| |||||||||||||||||||| ||||| |||||||    
T  9695664 gtcaacttgacccacttcttctccttctcatcaagcctgaatacatcaa 9695616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 9397746 - 9397903
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||||||| |||||| ||||||||| |||||| ||||| |||||||| |||| ||||| ||||| |||||||||||| | |||||||| || ||||||||    
T  9397746 catcatcaataaagacgacacaattccctttggcaacacacaaatccaaagctgaagcggaaaatgaacatccattcacaaagaacaagaccctatcccc 9397845  T
Q  112 taaactcgccaacttgaccca--tttcttctccttctcatcaagtctgaacacatcaa 167  Q
    |||||||  |||||| || ||  ||| || | |||||| |||||||| ||||||||||    
T  9397846 taaactcatcaacttcacgcattttttttatacttctcgtcaagtctaaacacatcaa 9397903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 164
Target Start/End: Complemental strand, 9646499 - 9646367
Alignment:
Q  32 caatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccc 131  Q
    ||||| ||||||  |||| ||||||||||||| || ||||||||||||||||| |  || || |||||||| |||||||||||| ||  |||||| ||||    
T  9646499 caattccctttggaaacacacaaatccgaagctgatgcagaaaacgaacatccttcgccaaaaaacaaaaccctatcccctaaattcatcaacttcaccc 9646400  T
Q  132 atttcttctccttctcatcaagtctgaacacat 164  Q
    |||||||||||||||||| || |||||| ||||    
T  9646399 atttcttctccttctcatgaaatctgaaaacat 9646367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 9352871 - 9353003
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 120  Q
    |||||||||||||||||||||||  || | ||| |||| || ||||||||||||||||||||||| ||||||  |||||||| ||| |||||||  |       
T  9352871 taaagatgacacaatttcctttgggaagacacagatcccaaccagaagcagaaaacgaacatccactccccacaaacaaaaccctaccccctaatttttt 9352970  T
Q  121 caacttgacccatttcttctccttctcatcaag 153  Q
    |||||| ||||| ||||||||| ||||||||||    
T  9352971 caacttcacccacttcttctccatctcatcaag 9353003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 9432856 - 9433012
Alignment:
Q  11 acatcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatccc 110  Q
    ||||||||| ||||||||| |||||| |||| |  |||| |||||||||| || ||||||||||| ||| || ||  ||| | ||||||||| ||||| |    
T  9432856 acatcatcaataaagatgatacaattcccttcggaaacacacaaatccgaggctgaagcagaaaaggaatattcaagccctatgaacaaaaccctatctc 9432955  T
Q  111 ctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    ||||| ||   | ||| ||||| ||| |||||||||||||||||||||| |||||||    
T  9432956 ctaaattcttgatcttcacccacttcctctccttctcatcaagtctgaaaacatcaa 9433012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 9416534 - 9416689
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||||||| ||||||  |||||||| |||||   |||| ||| |||| | || ||||||||||| ||||||  |||| | |||||||| || ||||||||    
T  9416534 catcatcaataaagacaacacaattccctttagtaacacacatatccaaggctgaagcagaaaatgaacatttattcacgaagaacaacaccctatcccc 9416633  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    |||||||| |||||| |||||||| || | |||||| ||||| | |||||||||||    
T  9416634 taaactcgtcaacttcacccattttttattcttctcgtcaagacagaacacatcaa 9416689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 9340679 - 9340772
Alignment:
Q  59 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaa 152  Q
    |||||||||||||||||||||||||||  ||| | ||| ||||| |||||||| ||| ||  |||||| ||||| |||||||||||||||||||    
T  9340679 gaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaaccctatccccgaaattcctcaacttcacccacttcttctccttctcatcaa 9340772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 9377056 - 9377149
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaa 114  Q
    |||||||||||||||||||||||  || | ||| |||| |||||||||||| ||||||||||||| ||||||  |||||||  |||||||||||    
T  9377056 taaagatgacacaatttcctttgggaagacacagatcccaagcagaagcaggaaacgaacatccactccccacaaacaaaatcctatcccctaa 9377149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 9614104 - 9614009
Alignment:
Q  16 atcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||| ||||||| |||||||||||||||  || | ||| ||| ||||||||||||||||| ||||||||| |||||||||| |||||  |||||||    
T  9614104 atcaataaagataacacaatttcctttggtaagacacagatctgaagcagaagcagaaaatgaacatccactccccaagaaaaaaaccatatcccc 9614009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 9626626 - 9626488
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 120  Q
    |||||||||  ||||| ||||||  |||| ||||||||||||| || |||||||| ||   ||| || || || |||||||| |||||||||||| ||      
T  9626626 taaagatgatgcaattccctttggaaacacacaaatccgaagctgatgcagaaaatgatgttcctttgccaaaaaacaaaaccctatcccctaaattcat 9626527  T
Q  121 caacttgacccatttcttctccttctcatcaagtctgaa 159  Q
    ||| || |||||||||||||||||||||| || ||||||    
T  9626526 caaattcacccatttcttctccttctcatgaaatctgaa 9626488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 9441915 - 9441815
Alignment:
Q  33 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 132  Q
    |||| |||||||||||| ||| |||| | || ||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||  |||||| |||||    
T  9441915 aattccctttgacaacacacatatccaaggctgaagcagaaaatgaacatttattcacaaagaacaaaaccctatcccctaaactcatcaacttcaccca 9441816  T
Q  133 t 133  Q
    |    
T  9441815 t 9441815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 9347957 - 9348088
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 120  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9347957 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9348056  T
Q  121 caacttgacccatttcttctccttctcatcaa 152  Q
    |||||| ||||| |||||||||||||||||||    
T  9348057 caacttcacccacttcttctccttctcatcaa 9348088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 9369611 - 9369742
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 120  Q
    |||||| |||||||||||||||   || | | | ||| |||||||||||||||||||||||||||  ||| | ||| ||||  |||||||| |||  |      
T  9369611 taaagacgacacaatttcctttcggaatacatagatctgaagcagaagcagaaaacgaacatccacgcccaatgaaaaaaatcctatccccaaaatgcct 9369710  T
Q  121 caacttgacccatttcttctccttctcatcaa 152  Q
    |||||| ||||| |||||||||||||||||||    
T  9369711 caacttcacccacttcttctccttctcatcaa 9369742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 9756381 - 9756502
Alignment:
Q  52 caaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatca 151  Q
    ||||||||| ||||| ||||| || ||||| || | ||| || |||||||| |||||||| ||| || |||||||||||||  | ||||| |||||||||    
T  9756381 caaatccgatgcagatgcagagaatgaacagccttccccgaaaaacaaaaccctatcccccaaattcaccaacttgacccaccttttctctttctcatca 9756480  T
Q  152 agtctgaacacatcaagcttta 173  Q
    || ||  ||||||||| |||||    
T  9756481 agcctatacacatcaatcttta 9756502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 9686751 - 9686799
Alignment:
Q  119 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    |||||||||||||| |||||||| ||||||||||| ||||| |||||||    
T  9686751 gccaacttgacccacttcttctcgttctcatcaagcctgaatacatcaa 9686799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 81
Target Start/End: Complemental strand, 16011797 - 16011768
Alignment:
Q  52 caaatccgaagcagaagcagaaaacgaaca 81  Q
    ||||||||||||||||||||||||||||||    
T  16011797 caaatccgaagcagaagcagaaaacgaaca 16011768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 107 - 446
Target Start/End: Complemental strand, 13170744 - 13170405
Alignment:
Q  107 tcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgag 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||    
T  13170744 tcccctaaactcgccaacttgacccatttcttctccttttcatcaagtctgaacacatcaagctttaaaccatattcaccagggaaaccgtaacgatgag 13170645  T
Q  207 agtcatatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtc 306  Q
     |||||| ||||| |||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| | |    
T  13170644 ggtcatagatgtccactagcaacaactcaccctcgctctcgaccaagaatttcatgtcccctccatccacatattcagtcaataactcaacactatcgcc 13170545  T
Q  307 cggtccaaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggc 406  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||| |||||||||| |||||| |||| ||||| |||| ||||||| ||||| |||    
T  13170544 cggtccaaaagcaactgtccgaccaattttattgactgcacaaaaccgatctttaaacatgcagatatctaaaaagttcgtttacatgcaggggataggc 13170445  T
Q  407 gtccaacactctttgcggcaatggaacagtagcggatggc 446  Q
    ||||||| ||||| |||||||||||||||||| |||||||    
T  13170444 gtccaacgctcttcgcggcaatggaacagtagtggatggc 13170405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 23 - 395
Target Start/End: Complemental strand, 44688929 - 44688554
Alignment:
Q  23 aagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcca 122  Q
    ||||| |||||||| |||||| ||| ||||||||||||||||| || |||||| ||| || |||||||||||||||||| ||||| |||||||||||  |    
T  44688929 aagattacacaattccctttggcaatagacaaatccgaagcagtagtagaaaatgaatattcattccccaagaacaaaattctattccctaaactcgtta 44688830  T
Q  123 acttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtcatatatgtctac 222  Q
    |||| ||||||||||| | ||||||||  ||  ||||||||||||||  || |||||||||||| ||||| ||||||| |||||||||||| ||||| ||    
T  44688829 actttacccatttcttatgcttctcattgagcgtgaacacatcaagccgtagaccatcttcacccgggaacccaaaaccatgagagtcatagatgtccac 44688730  T
Q  223 tagcaacaactcacgctcactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtcc---ggtccaaaagca 319  Q
    ||||||||||||||  |||||||||||||||||||| |||||||||||||| |||| || ||||| |   |  |||||| |||||   | |||| |||||    
T  44688729 tagcaacaactcaccttcactctctaccaggaattttatgtcccctccatcaacatgtttagccacttgttgcacactaaagtccgctgctccataagca 44688630  T
Q  320 actgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgc 395  Q
    | |||||  ||||||||||| |||  | ||||| | |||||||| || || ||||||| |||||  ||||||||||    
T  44688629 aatgtccgaccaattttattgactatataaaacagctctttaaaaacacatatgtctacaaagtgtgttgacatgc 44688554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 13170793 - 13170758
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaa 47  Q
    ||||||||||||||||||||||||||||||||||||    
T  13170793 catcatcactaaagatgacacaatttcctttgacaa 13170758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 183; Significance: 9e-99; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 12 - 412
Target Start/End: Original strand, 18991165 - 18991562
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||| ||| |||||| ||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  18991165 catcgtcaataaagacgacacaattccctttgacaacagataaatcagaagcagaagcagaaaacgaacatccattccccaagaacaaaaccctattccc 18991264  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacacatcaagctttaaaccatcttcaccagggaaaccaaaacaatgagagtca 211  Q
    ||| |||  | || |   ||||| |||||   |||||| ||| || ||||| |  || |||| ||| | ||| |||||||| ||||||||||| ||||||    
T  18991265 taagctcttcgacct---ccattccttctttctctcattaagcctaaacaccttcagttttagacctttttcgccagggaacccaaaacaatgcgagtca 18991361  T
Q  212 tatatgtctactagcaacaactcacgctcactctctaccaggaatttcatgtcccctccatccacatattcagccaataactcgacactatagtccggtc 311  Q
     | ||||| ||||||||||||||||  |||| |||||||| ||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||  ||    
T  18991362 cagatgtccactagcaacaactcaccttcacactctaccaagaatttcatatcccctccattcacatattcagccactaactcaacactatagtccaatc 18991461  T
Q  312 caaaagcaactgtcctgccaattttattaactgcacaaaaccggtctttaaacacgcagatgtctagaaagtacgttgacatgcaagggatcggcgtcca 411  Q
    |||| ||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||    
T  18991462 caaacgcaactgtcctaccaattttattaaccgcataaaaccgctctttaaacacgcagatgtctagaaagtacgttgacatgcatgggatcaacgtcca 18991561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 4428592 - 4428742
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||||||| |||||||||||||||| |||||   ||||||||| || |||||||| ||||||||| |||||||||||||||| |||||||| ||||||||    
T  4428592 catcatcaataaagatgacacaattccctttagtaacagacaactcagaagcagaggcagaaaacaaacatccattccccaaaaacaaaaccctatcccc 4428691  T
Q  112 taaactcgccaacttgacccatttcttctccttctcatcaagtctgaacac 162  Q
     ||||||| ||| || ||||||||   | ||||||||||||| || |||||    
T  4428692 caaactcgtcaatttcacccatttacgcgccttctcatcaagcctaaacac 4428742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 4439821 - 4439927
Alignment:
Q  12 catcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccc 111  Q
    |||||||| |||||||||||||||| |||||   |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||    
T  4439821 catcatcaataaagatgacacaattccctttagaaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatctcc 4439920  T
Q  112 taaactc 118  Q
     ||||||    
T  4439921 caaactc 4439927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 235195 - 235311
Alignment:
Q  33 aatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgaccca 132  Q
    |||| ||||||  |||| ||||||||||||||||||||||||||||||||     ||||||||| |||||||||||||||||| | |||||||| |||||    
T  235195 aattccctttgggaacacacaaatccgaagcagaagcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcaccca 235294  T
Q  133 tttcttctccttctcat 149  Q
     ||||||||||| ||||    
T  235295 cttcttctccttttcat 235311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 8814500 - 8814385
Alignment:
Q  29 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttga 128  Q
    |||||||| ||||||  |||| |||||||| |||||||||||||||| |||||      |||||| ||||||||||||||||||||| |||||||||| |    
T  8814500 acacaattccctttgggaacacacaaatccaaagcagaagcagaaaatgaacacaaggaccccaaaaacaaaactctatcccctaaattcgccaacttca 8814401  T
Q  129 cccatttcttctcctt 144  Q
    |||| |||||||||||    
T  8814400 cccacttcttctcctt 8814385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 246841 - 246958
Alignment:
Q  25 gatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaac 124  Q
    |||||||||||| ||||||  |||| |||||||| |||||||||||||||| || ||      |||||||||||||||| |||| |||||| | ||||||    
T  246841 gatgacacaattccctttgtgaacacacaaatccaaagcagaagcagaaaatgaccagaacaaccccaagaacaaaactgtatctcctaaattagccaac 246940  T
Q  125 ttgacccatttcttctcc 142  Q
    || |||||||||||||||    
T  246941 ttcacccatttcttctcc 246958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 251515 - 251412
Alignment:
Q  46 aacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttc 145  Q
    |||| |||||||||| |||||| ||||||| ||||||     |||||||||||||||||||||||||| | |||||||||| ||||| ||||| |||||     
T  251515 aacacacaaatccgatgcagaaacagaaaatgaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttt 251416  T
Q  146 tcat 149  Q
    ||||    
T  251415 tcat 251412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 231589 - 231674
Alignment:
Q  59 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctcctt 144  Q
    ||||||||||||||||| ||||||     |||||||||||||||| ||||||||||| | |||||||| ||||| ||| |||||||    
T  231589 gaagcagaagcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctt 231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 20694447 - 20694304
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgc 120  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |     
T  20694447 taaagatgacacaattccctttggcaacacacaaatccgaagcagaagcagaaaacgaacatccattccccaaaaacaaaaccctatcccccaaacttgt 20694348  T
Q  121 caacttgacccatttcttctccttctcatcaagtctgaacacat 164  Q
    |||  | ||||||||||||||||| |||||||| ||||||||||    
T  20694347 caaactcacccatttcttctccttttcatcaagcctgaacacat 20694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 7041464 - 7041612
Alignment:
Q  19 actaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactc 118  Q
    |||||||||||||||||| |||||| ||||  ||||||||||||||||| |||| ||||||||| | |  |||||||||||||| ||||||||||||||     
T  7041464 actaaagatgacacaattccctttggcaacgcacaaatccgaagcagaaacagagaacgaacatacttctcccaagaacaaaaccctatcccctaaacta 7041563  T
Q  119 gccaacttgacccatttcttctccttctcatcaagtctgaacacatcaa 167  Q
    | |||||| ||||| |||||||||||||||| |||| | |||| |||||    
T  7041564 gtcaacttcacccacttcttctccttctcattaagtttaaacaaatcaa 7041612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 149
Target Start/End: Original strand, 7046801 - 7046937
Alignment:
Q  13 atcatcactaaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccct 112  Q
    |||| |||||| ||| |||||||| |||||| ||||| ||||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||||    
T  7046801 atcagcactaatgatcacacaattccctttggcaacatacaaatctgaaaaagaagcagaaaacgaacattttatccccaagaacaaaactttatcccct 7046900  T
Q  113 aaactcgccaacttgacccatttcttctccttctcat 149  Q
    |||||||  ||||| ||||| ||||||||||||||||    
T  7046901 aaactcgttaacttcacccacttcttctccttctcat 7046937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 7025720 - 7025854
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 114  Q
    ||||||||||| |||| |||||| ||||| ||||||| |||||| |||||||||||||||||      ||   ||||||||||||||| ||||| |||||    
T  7025720 taaagatgacagaattccctttggcaacacacaaatctgaagcacaagcagaaaacgaacataccaaccccaaccccaagaacaaaaccctatctcctaa 7025819  T
Q  115 actcgccaacttgacccatttcttctccttctcat 149  Q
    ||||| |||||| ||||| ||||||||||||||||    
T  7025820 actcgtcaacttcacccacttcttctccttctcat 7025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 7012784 - 7012918
Alignment:
Q  21 taaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaa 114  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||| | |||||||||||||||      ||   ||||||||||||||  ||||| |||||    
T  7012784 taaagatgacagaattccctttggcaacacacaaatccgaagcacaggcagaaaacgaacataccaaccccaaccccaagaacaaaatcctatctcctaa 7012883  T
Q  115 actcgccaacttgacccatttcttctccttctcat 149  Q
    ||| | |||||| ||||| ||||||||||||||||    
T  7012884 acttgtcaacttcacccacttcttctccttctcat 7012918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 7029850 - 7029911
Alignment:
Q  88 ccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 149  Q
    ||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||    
T  7029850 ccccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcat 7029911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 147
Target Start/End: Complemental strand, 9159646 - 9159515
Alignment:
Q  22 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 115  Q
    |||||||| |||||| ||||||  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9159646 aaagatgatacaattccctttggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9159547  T
Q  116 ctcgccaacttgacccatttcttctccttctc 147  Q
    ||||  || || ||||| ||||||||||||||    
T  9159546 ctcgttaatttcacccacttcttctccttctc 9159515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 9170782 - 9170915
Alignment:
Q  22 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacat------ccattccccaagaacaaaactctatcccctaaa 115  Q
    |||||||| |||||| |||| |  |||| ||||||| ||||||||| ||||||||||| ||      ||   ||||||||||||||| ||||||||||||    
T  9170782 aaagatgatacaattcccttgggaaacacacaaatctgaagcagaaacagaaaacgaatataccaaccccaaccccaagaacaaaaccctatcccctaaa 9170881  T
Q  116 ctcgccaacttgacccatttcttctccttctcat 149  Q
    ||||  || || ||||| ||||||||||||||||    
T  9170882 ctcgttaatttcacccacttcttctccttctcat 9170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 3695661 - 3695792
Alignment:
Q  22 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 121  Q
    |||||| |||||||| |||||| || |||||||||||||||||  ||||||||| ||||||    | || |||||||||||||||||||||||||||  |    
T  3695661 aaagatcacacaattccctttggcagcagacaaatccgaagcaatagcagaaaatgaacatatgataccgaagaacaaaactctatcccctaaactctac 3695760  T
Q  122 aacttgacccatttcttctccttctcatcaagt 154  Q
    |||||||  || ||||||| |||||||| ||||    
T  3695761 aacttga-tcacttcttcttcttctcattaagt 3695792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 450219 - 450111
Alignment:
Q  59 gaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcatcaagtctga 158  Q
    ||||||||||||||||| ||| |   ||  || |||||||||| | |||| |||||| ||  |||||||||||| || ||||||||||||||||| || |    
T  450219 gaagcagaagcagaaaaggaatacagatcgcctaagaacaaaattgtatctcctaaattcctcaacttgacccactttttctccttctcatcaagcctaa 450120  T
Q  159 acacatcaa 167  Q
    |||||||||    
T  450119 acacatcaa 450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 18571086 - 18571213
Alignment:
Q  29 acacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaa---aactctatcccctaaactcgccaact 125  Q
    |||||||| ||||||  |||| |||||||||||||||||  |||||| |||| | |  | || ||||||||   |||| ||||||||||||||| ||| |    
T  18571086 acacaattccctttggaaacacacaaatccgaagcagaaatagaaaaagaacctgccatgcctaagaacaaaacaactgtatcccctaaactcgtcaatt 18571185  T
Q  126 tgacccatttcttctccttctcatcaag 153  Q
    | ||||| ||||||||||||||||||||    
T  18571186 tcacccacttcttctccttctcatcaag 18571213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 33541623 - 33541750
Alignment:
Q  22 aaagatgacacaatttcctttgacaacagacaaatccgaagcagaagcagaaaacgaacatccattccccaagaacaaaactctatcccctaaactcgcc 121  Q
    ||||| ||||||||| |||||| |||| |||||||| |||||||| |||||||| |||||  ||  ||| |||||||||||  |||| |||||||||       
T  33541623 aaagaggacacaattacctttggcaacggacaaatcagaagcagatgcagaaaaggaacagtcagcccctaagaacaaaacaatatctcctaaactcttt 33541722  T
Q  122 aacttgacccatttcttctccttctcat 149  Q
    ||||| ||||| | | ||||||||||||    
T  33541723 aacttcacccactccgtctccttctcat 33541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University