View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3052_high_6 (Length: 434)
Name: NF3052_high_6
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 230 - 418
Target Start/End: Complemental strand, 38530402 - 38530214
Alignment:
| Q |
230 |
ggtaaggataattcgtccaattcgaacaagtctgataaaccatcacacagtaatgacaaagaggttatcgaagatcctcgatttgcaatggttcacaccg |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38530402 |
ggtaaggataattcgtccaattcgaacaagtctgataaaccatcacacagtaatgacaaagaggttatcgaagatcctcgatttgcaatggttcacaccg |
38530303 |
T |
|
| Q |
330 |
acccacgttttcgtgaaccaccaaagcatcaaactaaggtttcaattgactctcgattcaaccgcatgttcactcacaagagctttttg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38530302 |
acccacgttttcgtgaaccaccaaagcatcaaactaaggtttcaattgactctcgattcaatcgcatgttcactcacaagagctttttg |
38530214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 38530615 - 38530476
Alignment:
| Q |
17 |
catcatcgtttttatttcaacaataaaattgtctaaaaccctaaaaccacaaacttcagcagctccttcacctttgccgttctctctgaaactagtcgga |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
38530615 |
catcatcgtttttatatcaacaataaaattgtctaaaaccctaaaaccacaaacttcagcagctccttaacctttgccgttctttctgaaactagtcgga |
38530516 |
T |
|
| Q |
117 |
atcactcgccggatttcatcgtcgacatcgcaatgggatc |
156 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38530515 |
atcactcgccggatttcatcgtcgtcatcgcaatgggatc |
38530476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 291 - 416
Target Start/End: Complemental strand, 41314984 - 41314861
Alignment:
| Q |
291 |
aggttatcgaagatcctcgatttgcaatggttcacaccgacccacgttttcgtgaaccaccaaagcatcaaactaaggtttcaattgactctcgattcaa |
390 |
Q |
| |
|
|||||||||| ||||||| ||| || ||||||||| |||||||||||| | || | ||||||||||||| |||| ||||||||| |||||| |||| |
|
|
| T |
41314984 |
aggttatcgatgatcctcagttttcactggttcacatcgacccacgttt--gagaggctccaaagcatcaaataaaggcttcaattgaatctcgactcaa |
41314887 |
T |
|
| Q |
391 |
ccgcatgttcactcacaagagctttt |
416 |
Q |
| |
|
||||||||| ||||||||||| |||| |
|
|
| T |
41314886 |
ccgcatgttaactcacaagagttttt |
41314861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University