View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_10 (Length: 428)

Name: NF3052_low_10
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_10
NF3052_low_10
[»] chr2 (29 HSPs)
chr2 (8-411)||(10370717-10371120)
chr2 (252-407)||(10334859-10335014)
chr2 (8-175)||(10346498-10346665)
chr2 (8-175)||(10350970-10351136)
chr2 (250-411)||(10346832-10346993)
chr2 (255-411)||(9287732-9287888)
chr2 (250-396)||(10340580-10340730)
chr2 (255-407)||(9318688-9318843)
chr2 (255-407)||(9271847-9272002)
chr2 (250-416)||(10351299-10351461)
chr2 (261-410)||(11425276-11425424)
chr2 (283-411)||(9285079-9285207)
chr2 (258-407)||(9291102-9291253)
chr2 (255-405)||(9273194-9273344)
chr2 (255-407)||(9326552-9326707)
chr2 (255-411)||(9315210-9315365)
chr2 (262-407)||(8574361-8574502)
chr2 (64-175)||(10334545-10334659)
chr2 (257-383)||(9068973-9069096)
chr2 (255-407)||(9076551-9076700)
chr2 (8-150)||(10340267-10340392)
chr2 (307-411)||(9062074-9062182)
chr2 (178-231)||(10334745-10334798)
chr2 (348-405)||(7116943-7117000)
chr2 (255-308)||(7117004-7117057)
chr2 (327-405)||(12007142-12007220)
chr2 (121-175)||(9300814-9300864)
chr2 (179-229)||(9287643-9287692)
chr2 (257-406)||(9363617-9363767)
[»] chr4 (2 HSPs)
chr4 (8-168)||(26573759-26573918)
chr4 (280-411)||(26574122-26574253)
[»] chr3 (1 HSPs)
chr3 (255-406)||(37461536-37461687)
[»] chr6 (1 HSPs)
chr6 (13-175)||(10857069-10857221)
[»] chr8 (1 HSPs)
chr8 (294-405)||(41968296-41968408)
[»] scaffold0667 (1 HSPs)
scaffold0667 (276-405)||(1713-1845)
[»] chr1 (2 HSPs)
chr1 (257-321)||(29462264-29462328)
chr1 (346-405)||(29454250-29454309)
[»] chr7 (1 HSPs)
chr7 (58-117)||(45241309-45241368)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 10370717 - 10371120
Alignment:
Q  8 ttgtcagaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370717 ttgtcagaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcag 10370816  T
Q  108 aaataagaaataaatgcttgcctcattttagagttcacaaacacatacaaatttttcaaatcgaccatggcaaatagtgatgtaacagttttacacaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370817 aaataagaaataaatgcttgcctcattttagagttcacaaacacatacaaatttttcaaatcgaccatggcaaatagtgatgtaacagttttacacaaaa 10370916  T
Q  208 gggataactgtgatcttagacacacnnnnnnngagggataaatccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaaga 307  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10370917 gggataactgtgatcttagacacacaaaaaaagagggataaatccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaaga 10371016  T
Q  308 aacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371017 aacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 10371116  T
Q  408 gaaa 411  Q
    ||||    
T  10371117 gaaa 10371120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 252 - 407
Target Start/End: Original strand, 10334859 - 10335014
Alignment:
Q  252 caacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttc 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10334859 caacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttc 10334958  T
Q  352 cttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  10334959 cttccatcccttacagtctcaatttaaatcctcgggacaagaagtcatccctgtgg 10335014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 10346498 - 10346665
Alignment:
Q  8 ttgtcagaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcag 107  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    ||    
T  10346498 ttgtgagaactgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatacattagaagccctgttgaaaatttcatgtttcctaatag 10346597  T
Q  108 aaataagaaataa-atgcttgcctcattttagagttcacaaacacatacaaatttttcaaatcgaccat 175  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10346598 aaataagaaataagatgcttgcctcattttagagttcacaaacacatacaaa-ttttcaaatcgaccat 10346665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 10350970 - 10351136
Alignment:
Q  8 ttgtcagaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcag 107  Q
    ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||| |||||||  |||||    
T  10350970 ttgtccgaattgtttttcagaaatttgttcaaaattt--gtatgataataaggagtctatagactagaagccctgttgaaaatttgatgcttctatgcag 10351067  T
Q  108 aaataagaaata-aatgcttgcctcattttagagttcacaaacacatacaaatttttcaaatcgaccat 175  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  10351068 aaataagaaatacgatgcttggctcattttagagttcacaaacacatacaaattttttaaatcgaccat 10351136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 250 - 411
Target Start/End: Original strand, 10346832 - 10346993
Alignment:
Q  250 tccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 349  Q
    |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || || || |||||||||||||||||||| || ||    
T  10346832 tccatcattatcaattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaaccggtgcttcatgtttcagctgcacttcacaggtcct 10346931  T
Q  350 tccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaa 411  Q
    |||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  10346932 tcctaccatcccttacaatctcaatttaaatcctcgggacaagaagtcatccctgtgggaaa 10346993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 255 - 411
Target Start/End: Original strand, 9287732 - 9287888
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttcctt 354  Q
    ||||||||||||| ||||||| ||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| || ||||| |    
T  9287732 cattatcaattcagcctttcccacaagacaaggtgactaactccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccat 9287831  T
Q  355 ccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaa 411  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  9287832 ccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttgtgggaaa 9287888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 250 - 396
Target Start/End: Original strand, 10340580 - 10340730
Alignment:
Q  250 tccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacac----g 345  Q
    |||| ||||||||||||||||||| | ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    |    
T  10340580 tccatcattatcaattcaacctttaccacataccgaggtgactaattccatcataagaaacaactggagcatcctgtttcagctgcacttcactcacagg 10340679  T
Q  346 ttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagt 396  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10340680 tccttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagt 10340730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 255 - 407
Target Start/End: Original strand, 9318688 - 9318843
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttca---gctgcacttcacacgttcttc 351  Q
    ||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||| ||| |||||||||||   ||||||| ||||| || ||||    
T  9318688 cattatcaattcagcctttcccacaaaccaaggtttctaattccatcacaagaaacaacttgagtatcctgtttcagctgctgcacatcacaggtccttc 9318787  T
Q  352 cttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  9318788 cttccatcccttacaatctcaatttaaatcctcgggacaagaagtcgtccctgtgg 9318843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 255 - 407
Target Start/End: Original strand, 9271847 - 9272002
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaac---tggagcatcctgtttcagctgcacttcacacgttcttc 351  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||   | ||  |||||||||||||||||| ||||| || ||||    
T  9271847 cattatcaattcaacctttcccacaaaccaaggagactaattccattacaagaaacaacaacttgattatcctgtttcagctgcacatcacatgtccttc 9271946  T
Q  352 cttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
     |||||||||||||| |||||||||||||||||||||||| |||||| ||||||||    
T  9271947 tttccatcccttacaatctcaatttaaatcctcgggacaagaagtcgaccctgtgg 9272002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 250 - 416
Target Start/End: Original strand, 10351299 - 10351461
Alignment:
Q  250 tccaacattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttct 349  Q
    |||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| | |||||||| |||||||||||||||||    |      
T  10351299 tccatcattatcaattcaacctttcctacaaaccaaggtgagcaattccatcacaagaaacaacagaagcatcctatttcagctgcacttcac----tgg 10351394  T
Q  350 tccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaagatga 416  Q
    ||||||| ||||||||| |||||||||||||||||  ||||| ||||||||||||||| ||| ||||    
T  10351395 tccttccttcccttacaatctcaatttaaatcctccagacaagaagtcgtccctgtggaaaaaatga 10351461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 261 - 410
Target Start/End: Complemental strand, 11425424 - 11425276
Alignment:
Q  261 caattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcc 360  Q
    |||||||| ||||||  ||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||| || | |||||||||||    
T  11425424 caattcaaactttccc-caaaccaaggtgattaattccttcacaagaaacaactcgagtatcctgtttcagctgcacatcacaggtccatccttccatcc 11425326  T
Q  361 cttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaa 410  Q
    |||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  11425325 cttacaatgtcaatttaaatcctcgggacaagaagtcgtccctgtgggaa 11425276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 283 - 411
Target Start/End: Complemental strand, 9285207 - 9285079
Alignment:
Q  283 caaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcc 382  Q
    |||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||    
T  9285207 caagatgactaattccatcacaagaaactacttgagcatcatgtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatcc 9285108  T
Q  383 tcgggacaaaaagtcgtccctgtgggaaa 411  Q
    || |||||| |||||||||||||| ||||    
T  9285107 tccggacaagaagtcgtccctgtgagaaa 9285079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 258 - 407
Target Start/End: Original strand, 9291102 - 9291253
Alignment:
Q  258 tatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactg--gagcatcctgtttcagctgcacttcacacgttcttccttc 355  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||   ||| |||||||||||||||||| ||||| |  ||| ||||    
T  9291102 tatcaattcaaccttccccacaaaccaaggtaactaattccatcacaacaaacaacttttgagaatcctgtttcagctgcacatcacaggcccttacttc 9291201  T
Q  356 catcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  9291202 catcccttacaatctcaatttaaatcctcgggacaagaagtcctccctgtgg 9291253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 255 - 405
Target Start/End: Original strand, 9273194 - 9273344
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttcctt 354  Q
    ||||||||||||||||||||   |||||||||| |||||||||||| ||||||| ||||| ||||||| ||||  |||||||  ||||| || |||||||    
T  9273194 cattatcaattcaacctttctcgcaaaccaaggagactaattccataacaagaagcaacttgagcatcgtgttaaagctgcatatcacaggtccttcctt 9273293  T
Q  355 ccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 405  Q
    |||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  9273294 ccatccctcacaatctcaatttaaatcctcgggacaagaagtcgtccctgt 9273344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 255 - 407
Target Start/End: Original strand, 9326552 - 9326707
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc---acttcacacgttcttc 351  Q
    ||||||| ||||||||| ||  ||||||||||  |||||||||||||||||||||||||| ||| ||||||| ||||||||   || ||||| || ||||    
T  9326552 cattatccattcaacctatcgcacaaaccaagcagactaattccatcacaagaaacaacttgagtatcctgtatcagctgctgcacatcacaggtccttc 9326651  T
Q  352 cttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    |||| ||||||||||  ||||||||||||||||||||||| |||||||||||||||    
T  9326652 cttctatcccttacaacctcaatttaaatcctcgggacaagaagtcgtccctgtgg 9326707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 255 - 411
Target Start/End: Original strand, 9315210 - 9315365
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctg---cacttcacacgttcttc 351  Q
    |||||||||||||||| |||| ||||||||||  |||||||||||||||||||||||| | ||||||| |||||||||||   ||| ||||| |    ||    
T  9315210 cattatcaattcaaccattcccacaaaccaagcagactaattccatcacaagaaacaagttgagcatcatgtttcagctgctacacatcacagg----tc 9315305  T
Q  352 cttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgggaaa 411  Q
    | ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||    
T  9315306 cctccatcccttacaatctcaatttaaatcctcgggacaagaagtcgtccctgttggaaa 9315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 262 - 407
Target Start/End: Complemental strand, 8574502 - 8574361
Alignment:
Q  262 aattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatccc 361  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |    |||||  | |||    
T  8574502 aattcaaccttttccacaaaccaaggtgactaattccatcacaagaaacaacttgagcatcctgtttcagctgcacatcacagg----tcctttaacccc 8574407  T
Q  362 ttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    ||||| |||||||||||||| |  |||||| ||| | |||||||||    
T  8574406 ttacaatctcaatttaaatctttaggacaagaagccatccctgtgg 8574361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 10334545 - 10334659
Alignment:
Q  64 ctatagattagaagccctgttgaaaatttcatgcttccctgcagaaataagaaata-aatgcttgcctcattttagagttcacaaacac--atacaaatt 160  Q
    ||||||| ||||||||||||| |||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||||||||    
T  10334545 ctatagactagaagccctgttcaaaaattcttccttccctgcagaaataagaaatacaatgcttgcctcattttagagttcaaaaacacaaatacaaatt 10334644  T
Q  161 tttcaaatcgaccat 175  Q
    ||| |||||||||||    
T  10334645 ttttaaatcgaccat 10334659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 257 - 383
Target Start/End: Complemental strand, 9069096 - 9068973
Alignment:
Q  257 ttatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagct-gcacttcacacgttcttccttc 355  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||| | |||| ||||| |    ||||||    
T  9069096 ttatcaattcaacctttcccacaaaccaaggtgactaattacatcacaagaagcaacttgagcatcatgtttcagttggcacatcacagg----tccttc 9069001  T
Q  356 catcccttacagtctcaatttaaatcct 383  Q
    ||||||||||| ||||||||||||||||    
T  9069000 catcccttacaatctcaatttaaatcct 9068973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 255 - 407
Target Start/End: Complemental strand, 9076700 - 9076551
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcc-tgtttcagctg-cacttcacacgttcttcc 352  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||  ||||||| | ||||||||| ||| ||||| |    |||    
T  9076700 cattatcaattcaacctttcctgcaaaccaaggtgactaattacatca-aagaaacaactctagcatccatctttcagctgacacatcacagg----tcc 9076606  T
Q  353 ttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtgg 407  Q
    |||||||||||||| ||||||||||||||||  |||||| ||| | |||||||||    
T  9076605 ttccatcccttacaatctcaatttaaatcctttggacaagaagccatccctgtgg 9076551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 10340267 - 10340392
Alignment:
Q  8 ttgtcagaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcag 107  Q
    ||||||||||| |||||||||||||||||||||||           ||||||||||||||||| ||||||||  ||| ||||||||||||||||||||||    
T  10340267 ttgtcagaattatttttcagaaatttgttcaaaat-----------aataaggagtctatagactagaagccgagttaaaaatttcatgcttccctgcag 10340355  T
Q  108 aaataagaaataaatgcttgcctcattttagagttcacaaaca 150  Q
    |||||||      ||||||||||||||||| | ||||||||||    
T  10340356 aaataag------atgcttgcctcattttataattcacaaaca 10340392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 307 - 411
Target Start/End: Complemental strand, 9062182 - 9062074
Alignment:
Q  307 aaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcc----cttacagtctcaatttaaatcctcgggacaaaaagtcgtccc 402  Q
    |||||||| ||||||| |||||||||||||| ||| | || |||||||||||||    |||||| | ||| |||||||||||||||||| ||||||||||    
T  9062182 aaacaacttgagcatcttgtttcagctgcacatcataggtccttccttccatccatcccttacaatttcagtttaaatcctcgggacaagaagtcgtccc 9062083  T
Q  403 tgtgggaaa 411  Q
    |||| ||||    
T  9062082 tgtgagaaa 9062074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 10334745 - 10334798
Alignment:
Q  178 caaatagtgatgtaacagttttacacaaaagggataactgtgatcttagacaca 231  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  10334745 caaataatgatgtaacagttttacacaagagggataactgtgatcttagacaca 10334798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 7117000 - 7116943
Alignment:
Q  348 cttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 405  Q
    ||||||||||||||||||| ||||||||||||||||  |||||| ||||| |||||||    
T  7117000 cttccttccatcccttacaatctcaatttaaatcctttggacaagaagtcctccctgt 7116943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 308
Target Start/End: Complemental strand, 7117057 - 7117004
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaa 308  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||||||||||||    
T  7117057 cattattaattcaaccattccaacaaaccaagatgactaattccatcacaagaa 7117004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 12007220 - 12007142
Alignment:
Q  327 ttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 405  Q
    ||||||| ||| | ||| |||||||||||  |||||||||   |||||||||||||||||||||  |||||||||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtcgtccctgt 12007142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 9300814 - 9300864
Alignment:
Q  121 atgcttgcctcattttagagttcacaaacacatacaaatttttcaaatcgaccat 175  Q
    |||||||||||||||||||||||||||||    |||||||||| |||||||||||    
T  9300814 atgcttgcctcattttagagttcacaaac----acaaattttttaaatcgaccat 9300864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 9287643 - 9287692
Alignment:
Q  179 aaatagtgatgtaacagttttacacaaaagggataactgtgatcttagaca 229  Q
    ||||||||||||| ||||||||||||| |||||| | ||||||||||||||    
T  9287643 aaatagtgatgtatcagttttacacaagagggat-agtgtgatcttagaca 9287692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 406
Target Start/End: Original strand, 9363617 - 9363767
Alignment:
Q  257 ttatcaattcaacctttcctacaaaccaaggtgactaattccatcaca-agaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttc 355  Q
    |||||||||||||  ||||  | ||||||||||||| ||||| || |  |||||||||| ||| |||| | ||||||| ||| || |  |||||||  ||    
T  9363617 ttatcaattcaactcttcccgctaaccaaggtgactcattccgtcgcttagaaacaacttgagtatccggcttcagctacacatccctggttcttctatc 9363716  T
Q  356 catcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtg 406  Q
      ||||||||| |  ||||||||||||| ||||||| ||||| ||||||||    
T  9363717 actcccttacaatgacaatttaaatccttgggacaagaagtcatccctgtg 9363767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 26573759 - 26573918
Alignment:
Q  8 ttgtcagaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcag 107  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||| ||    
T  26573759 ttgtcagaattgtttttcaaaaatttgttcaaaatttatgtatgataatgaggagtctatagactagaagccctgttgaaattttgatgcttccctgaag 26573858  T
Q  108 aaataagaaataa-atgcttgcctcattttagagttcacaaacacatacaaatttttcaaat 168  Q
    | ||||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||    
T  26573859 atataagaaataagatgcttgcctcattttagagttcacaa--acatacaaattttttaaat 26573918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 280 - 411
Target Start/End: Original strand, 26574122 - 26574253
Alignment:
Q  280 aaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaa 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||||||    
T  26574122 aaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacaggtccttccgtccatcgcttacagtctcaatttaaa 26574221  T
Q  380 tcctcgggacaaaaagtcgtccctgtgggaaa 411  Q
    | ||| ||||||||||||||||||||||||||    
T  26574222 ttctctggacaaaaagtcgtccctgtgggaaa 26574253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 255 - 406
Target Start/End: Original strand, 37461536 - 37461687
Alignment:
Q  255 cattatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgcacttcacacgttcttcctt 354  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| | ||| ||||||||||    
T  37461536 cattatcaattcaaccttacccacaaaccaaggagactaattccatcacaagaaacaacttgagcaccctgtttcagctgcacattacaggttcttcctt 37461635  T
Q  355 ccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgtg 406  Q
    ||| |||||||| ||||||||||||||||| |||||| |||| |||||||||    
T  37461636 ccaccccttacaatctcaatttaaatcctccggacaagaagtggtccctgtg 37461687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 10857221 - 10857069
Alignment:
Q  13 agaattgtttttcagaaatttgttcaaaatttatgtatgataataaggagtctatagattagaagccctgttgaaaatttcatgcttccctgcagaaata 112  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||    
T  10857221 agaattgtttttcagaaatatgctcaaaatttatgtacgataataaggagtctatagactagaagctctgttgaaaatttcttgtttccctgcagaaata 10857122  T
Q  113 agaaataaatgcttgcctcattttagagttcacaaacacatacaaatttttcaaatcgaccat 175  Q
     |      | |||||||||||||||||||||||||||    |||||||||| |||||||||||    
T  10857121 cg------acgcttgcctcattttagagttcacaaac----acaaattttttaaatcgaccat 10857069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 41968408 - 41968296
Alignment:
Q  294 attccatcacaagaaacaactggagcatcctg-tttcagctgcacttcacacgttcttccttccatcccttacagtctcaatttaaatcctcgggacaaa 392  Q
    ||||||||| ||||||||||| |||||||||| |||||||||||| ||||| || ||||||||||||||||||| |||||||||||||||| |||||||     
T  41968408 attccatcagaagaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaag 41968309  T
Q  393 aagtcgtccctgt 405  Q
    ||||| |||||||    
T  41968308 aagtcatccctgt 41968296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 405
Target Start/End: Original strand, 1713 - 1845
Alignment:
Q  276 tacaaaccaaggtgactaattccatcacaagaaacaactggagcatcctgtttcagctgc---acttcacacgttcttccttccatcccttacagtctca 372  Q
    |||||||||||  |||||||||||| ||||||||||||| ||| || |||||||||||||   || |||||  | |||| ||||| |||||||| |||||    
T  1713 tacaaaccaagcagactaattccattacaagaaacaacttgagaattctgtttcagctgctgcacatcacagatccttcattccaacccttacaatctca 1812  T
Q  373 atttaaatcctcgggacaaaaagtcgtccctgt 405  Q
    |||||||||||| |||||| |||||||||||||    
T  1813 atttaaatcctccggacaagaagtcgtccctgt 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 29462328 - 29462264
Alignment:
Q  257 ttatcaattcaacctttcctacaaaccaaggtgactaattccatcacaagaaacaactggagcat 321  Q
    |||||||||||| | |||| ||||| |||||||||||||||||| || |||||||||| ||||||    
T  29462328 ttatcaattcaatccttcccacaaaacaaggtgactaattccattactagaaacaacttgagcat 29462264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 29454309 - 29454250
Alignment:
Q  346 ttcttccttccatcccttacagtctcaatttaaatcctcgggacaaaaagtcgtccctgt 405  Q
    ||||||||||  ||| ||||| | |||||||||||||||||||||| ||||| |||||||    
T  29454309 ttcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatccctgt 29454250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 45241309 - 45241368
Alignment:
Q  58 aggagtctatagattagaagccctgttgaaaatttcatgcttccctgcagaaataagaaa 117  Q
    ||||| ||||||| |||||||||||||| |  |||| ||||||| |||||||||||||||    
T  45241309 aggagcctatagactagaagccctgttggatctttcttgcttccatgcagaaataagaaa 45241368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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