View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_11 (Length: 404)
Name: NF3052_low_11
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 194 - 395
Target Start/End: Complemental strand, 45035650 - 45035449
Alignment:
| Q |
194 |
atgagttgtaaaagtagtctgatgtacagtgttggttataatacgaggtttgcgagactattcttcatatagcacattcttgaccaatatgatattctaa |
293 |
Q |
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| T |
45035650 |
atgagttgtaaaagtagtctgatgtacagtgttggttataatacgaggtttgtgagtctattcttcatatagcacattcctgaccaatatgatattctaa |
45035551 |
T |
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| Q |
294 |
acttacacttcaattctcttgaataatttcttttgacaataacactccagaaaatttgagtgattgaatttactcctaagtattaacaattgtgttctgt |
393 |
Q |
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| T |
45035550 |
acttacacttcaattctctcgaataatttcttttgacaatagtactccagaaaatttgagtgattgaatttactcctaagtattaacaattgtgttatgt |
45035451 |
T |
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| Q |
394 |
gc |
395 |
Q |
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|| |
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| T |
45035450 |
gc |
45035449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 45035828 - 45035689
Alignment:
| Q |
16 |
cacctactacctattataatcatcagatgaatccacaatacaattcatactaccgtgccgtaagcgttgaagaggatcctaatggctgtgtcatcatcta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45035828 |
cacctactacctattataatcatcagatgaatccacaatacaattcatactaccgtgccgtaagcgttgaagaggatcctaatggctgtgtcatcatcta |
45035729 |
T |
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| Q |
116 |
aattttttatatcaagtttgataagaaaaaattaattcaa |
155 |
Q |
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| T |
45035728 |
aattttttatatcaagtttgataagaaaaaattaattcaa |
45035689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 45041074 - 45040971
Alignment:
| Q |
27 |
tattataatcatcagatgaatccacaatacaattcatactacc---gtgccgtaagcgttgaagaggatcctaatggctgtgtcatcatctaaatttttt |
123 |
Q |
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| T |
45041074 |
tattataatcatcggatgaaaccacagtacaatccttattacaacagtgccgtaagcgttgaagaggatcctaatggctgtgtcatcatctaaatttttt |
45040975 |
T |
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| Q |
124 |
atat |
127 |
Q |
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|||| |
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| T |
45040974 |
atat |
45040971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Complemental strand, 46175227 - 46175143
Alignment:
| Q |
62 |
atactaccgtgccgtaagcgttgaagaggatcctaatggctgtgtcatcatctaaattttttatatcaagtttgataagaaaaaa |
146 |
Q |
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| T |
46175227 |
atactgccgtgccataagcgttgaagaggatcctaatggctgtgtcatcctctaaattttatatactatgtttgataaaaaaaaa |
46175143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 45043107 - 45043031
Alignment:
| Q |
70 |
gtgccgtaagcgttgaagaggatcctaatggctgtgtcatcatctaaattttttatatcaagtttgataagaaaaaa |
146 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||| |||||| |
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| T |
45043107 |
gtgccataagcgttgaagaggatcctaatggctgtgtcatcctctaaattttatatactatgtttgataaaaaaaaa |
45043031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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