View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_12 (Length: 381)
Name: NF3052_low_12
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 153 - 381
Target Start/End: Original strand, 40799391 - 40799619
Alignment:
| Q |
153 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttagcaaatttgaaaggccttttc |
252 |
Q |
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| T |
40799391 |
ggtctgccaaatctcacctgttaattttgtgtatggatggtgatccacacaccaacaaaaacatgaagaaataagtttaggaaatttgaaaggccttttc |
40799490 |
T |
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| Q |
253 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcaaaaagttatgcctcg |
352 |
Q |
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| T |
40799491 |
ctcatcactgtattgccacaaactaaggttattctattagaaaggggcataaaagcctaaacaatcacttcaagaagcctatgcagaaagttatgcgtcg |
40799590 |
T |
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| Q |
353 |
ttggcaatttccttttaaatttccttcaa |
381 |
Q |
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| T |
40799591 |
ttggcaatttccttttaaatttccttcaa |
40799619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 40799239 - 40799328
Alignment:
| Q |
1 |
aaaagggaggaagaagatggaacaatttgatgtagcctattttcctccaccattaattaaagtgtttaaggtaaatgcaattatataggc |
90 |
Q |
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| T |
40799239 |
aaaagggaggaagaagatggaacaacttgatgtagcctattttcctcgaccattaattaaagtgtttaaggtaaatgcaattatataggc |
40799328 |
T |
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