View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_13 (Length: 366)
Name: NF3052_low_13
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 34567756 - 34567413
Alignment:
| Q |
9 |
ccaccaccaccgacaccgaattatacgacatcgaacagccacgcatcgtcgaccaaatgccaaacctagcagatcccgaattaatcgccgccatggccgg |
108 |
Q |
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| T |
34567756 |
ccaccacctccgacaccgaattatacgacatcgaacagccacgcatcgtcgaccaaatgccaaacctagcagatcccgaattaatcgccgccatggccgg |
34567657 |
T |
|
| Q |
109 |
ggccatcgacgacgttcaacaggccagggccattctcaaacttatcggcgaacggcccactcatgaagaagtggaccacgccaaaactaaactaactgat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
34567656 |
tgccatcgacgacgttcaacaggccagggccattctcaaacttatcggcgaacggcccactcatgaagaagtcgaccacgccaaaaccaaactaactgat |
34567557 |
T |
|
| Q |
209 |
atagaagccgaactttcgcgacaactggaaggaattgttctgttatcgaggccggcggagatcgaggttcatggatggagagcacatctggcggagaagg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567556 |
atagaagccgaactttcgcgacaactggaaggaattgttctgttatcgaggccgacggagatcgaggttcatggatggagagcacatctggcggagaagg |
34567457 |
T |
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| Q |
309 |
agaaacagtgtagagaggaagctgaaaaggaaaagcgtgtttgg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34567456 |
agaaacagtgtagagaggaagctgaaaaggaaaagcgtgtttgg |
34567413 |
T |
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