View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_14 (Length: 356)

Name: NF3052_low_14
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_14
NF3052_low_14
[»] chr3 (15 HSPs)
chr3 (17-339)||(50522813-50523137)
chr3 (223-320)||(45532649-45532747)
chr3 (223-317)||(1679268-1679363)
chr3 (223-317)||(42464520-42464615)
chr3 (223-306)||(10224738-10224822)
chr3 (223-317)||(28705173-28705268)
chr3 (223-317)||(52505410-52505505)
chr3 (161-230)||(1679122-1679191)
chr3 (223-324)||(48123254-48123355)
chr3 (161-230)||(10224592-10224661)
chr3 (228-312)||(25936670-25936755)
chr3 (169-230)||(28705345-28705406)
chr3 (171-230)||(45532513-45532572)
chr3 (173-230)||(52505276-52505333)
chr3 (170-226)||(25936528-25936584)
[»] chr4 (16 HSPs)
chr4 (17-339)||(54433535-54433858)
chr4 (223-318)||(41146041-41146136)
chr4 (223-320)||(52122526-52122624)
chr4 (223-317)||(3403161-3403256)
chr4 (223-317)||(8063684-8063779)
chr4 (223-312)||(53322781-53322871)
chr4 (223-317)||(31226774-31226869)
chr4 (223-317)||(14795443-14795538)
chr4 (156-230)||(53322948-53323022)
chr4 (161-230)||(8063538-8063607)
chr4 (223-306)||(52572637-52572721)
chr4 (161-230)||(14795615-14795684)
chr4 (161-230)||(31226946-31227015)
chr4 (120-230)||(41146213-41146323)
chr4 (161-230)||(3403015-3403084)
chr4 (167-230)||(52122386-52122449)
[»] chr7 (12 HSPs)
chr7 (17-339)||(25557609-25557932)
chr7 (223-320)||(27397704-27397802)
chr7 (229-320)||(11830121-11830213)
chr7 (223-317)||(40096093-40096188)
chr7 (231-320)||(38265130-38265220)
chr7 (231-312)||(36660907-36660989)
chr7 (223-317)||(39521206-39521301)
chr7 (161-230)||(40096265-40096334)
chr7 (167-230)||(27397564-27397627)
chr7 (170-230)||(11830296-11830356)
chr7 (161-218)||(11058547-11058604)
chr7 (161-230)||(36661072-36661141)
[»] chr6 (8 HSPs)
chr6 (223-320)||(8357314-8357411)
chr6 (223-317)||(1036403-1036498)
chr6 (223-317)||(7188367-7188462)
chr6 (161-230)||(1036257-1036326)
chr6 (161-230)||(7188221-7188290)
chr6 (161-230)||(8357488-8357557)
chr6 (161-230)||(22989068-22989137)
chr6 (161-230)||(23799259-23799328)
[»] chr1 (20 HSPs)
chr1 (223-325)||(25257034-25257137)
chr1 (223-317)||(8132606-8132701)
chr1 (228-320)||(30324142-30324235)
chr1 (223-317)||(6916451-6916546)
chr1 (223-317)||(38330873-38330968)
chr1 (223-317)||(52895290-52895385)
chr1 (223-317)||(28658895-28658990)
chr1 (223-320)||(1043595-1043693)
chr1 (232-317)||(3427296-3427382)
chr1 (223-312)||(5984616-5984706)
chr1 (161-230)||(6916305-6916374)
chr1 (161-230)||(8132778-8132847)
chr1 (161-230)||(38331045-38331114)
chr1 (161-230)||(52895144-52895213)
chr1 (161-230)||(25257214-25257283)
chr1 (171-230)||(5984783-5984842)
chr1 (161-230)||(28948650-28948719)
chr1 (161-230)||(30324317-30324385)
chr1 (161-216)||(3427460-3427515)
chr1 (185-230)||(1043770-1043815)
[»] scaffold0177 (2 HSPs)
scaffold0177 (223-324)||(25207-25309)
scaffold0177 (170-230)||(25069-25129)
[»] scaffold0037 (2 HSPs)
scaffold0037 (223-320)||(27373-27471)
scaffold0037 (170-230)||(27236-27296)
[»] scaffold0112 (2 HSPs)
scaffold0112 (223-318)||(41671-41767)
scaffold0112 (169-230)||(41533-41594)
[»] scaffold0640 (2 HSPs)
scaffold0640 (223-320)||(7744-7842)
scaffold0640 (167-230)||(7604-7667)
[»] chr5 (14 HSPs)
chr5 (223-320)||(32707488-32707586)
chr5 (228-320)||(1639381-1639474)
chr5 (223-317)||(9792732-9792827)
chr5 (223-317)||(12852546-12852641)
chr5 (223-317)||(30918788-30918883)
chr5 (223-306)||(26794580-26794664)
chr5 (223-317)||(33830197-33830292)
chr5 (161-230)||(9792904-9792973)
chr5 (161-230)||(26794434-26794503)
chr5 (167-230)||(1639236-1639299)
chr5 (161-230)||(12852718-12852787)
chr5 (161-230)||(39690172-39690241)
chr5 (167-230)||(32707348-32707411)
chr5 (167-226)||(33830373-33830432)
[»] chr2 (13 HSPs)
chr2 (223-320)||(4170109-4170207)
chr2 (223-320)||(38601977-38602075)
chr2 (229-320)||(33325186-33325278)
chr2 (223-320)||(6497259-6497357)
chr2 (223-306)||(22484714-22484798)
chr2 (232-317)||(6124623-6124709)
chr2 (223-312)||(40308425-40308515)
chr2 (161-230)||(40308279-40308348)
chr2 (120-230)||(4169922-4170032)
chr2 (161-226)||(6497113-6497178)
chr2 (17-84)||(32750822-32750887)
chr2 (161-224)||(22484881-22484944)
chr2 (161-216)||(6124787-6124842)
[»] scaffold0060 (1 HSPs)
scaffold0060 (223-317)||(30024-30119)
[»] chr8 (20 HSPs)
chr8 (223-317)||(4246363-4246458)
chr8 (223-317)||(28876154-28876249)
chr8 (223-317)||(34900958-34901053)
chr8 (223-320)||(2872574-2872672)
chr8 (231-320)||(12580132-12580222)
chr8 (223-320)||(36483856-36483954)
chr8 (223-320)||(37669001-37669099)
chr8 (223-317)||(5539856-5539951)
chr8 (223-317)||(45216809-45216904)
chr8 (232-317)||(43771290-43771376)
chr8 (161-230)||(4246535-4246604)
chr8 (161-230)||(5540028-5540097)
chr8 (161-230)||(34900812-34900881)
chr8 (161-230)||(45216663-45216732)
chr8 (173-227)||(2872440-2872494)
chr8 (161-219)||(37669187-37669245)
chr8 (161-230)||(12579978-12580047)
chr8 (161-226)||(36484035-36484100)
chr8 (161-216)||(43771157-43771212)
chr8 (172-230)||(28876019-28876077)
[»] scaffold0005 (2 HSPs)
scaffold0005 (223-317)||(44193-44288)
scaffold0005 (161-230)||(44047-44116)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 50522813 - 50523137
Alignment:
Q  17 aaaatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaagaaacacggactgtat 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  50522813 aaaatcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactccttaagaggaaacacggactgtat 50522912  T
Q  117 cagtctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 216  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  50522913 cagtctcctctcctctgtttccatcatcaaagaacattgtagcctccaacttcggttcatctaaagataactcagctaattcaattccaacaacatcaag 50523012  T
Q  217 cgggtcatgcgcataaaccaaatcttcaaccc--ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcaga 314  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |    
T  50523013 cgggtcatgcgcataaaccaaatcttcaacccctttttggatccattttatttcttttgaaataatgaataaaagagtaagtactccaatttttttcaaa 50523112  T
Q  315 acatgatgaatttcatacctgaact 339  Q
    ||||||||||   ||||||||||||    
T  50523113 acatgatgaagaacatacctgaact 50523137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 45532649 - 45532747
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  45532649 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 45532747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 1679268 - 1679363
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  1679268 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 1679363  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 42464520 - 42464615
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  42464520 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 42464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 10224738 - 10224822
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 306  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||| |||||    
T  10224738 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtgctcaaattt 10224822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 28705268 - 28705173
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| ||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  28705268 atgcacataaacaaaatcttctaccctttttggatccattttgtttcttttaaaagaatggataaaagagaaagtactcaaatttctctcacaaca 28705173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 52505410 - 52505505
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||||||||  ||| ||| ||||||||| |||||||| ||||| ||||| ||||    
T  52505410 atgcacataaaccaaatcttctaccctttttggatccattttgtttctttttcaagtatggataaaagagaaagtactcaaatttctctcacaaca 52505505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 1679122 - 1679191
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  1679122 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 1679191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 324
Target Start/End: Complemental strand, 48123355 - 48123254
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc--ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| ||||  ||||||||||||||| ||  |||| |||||||| ||||||||| |||||||| ||||| ||||| |||| ||    
T  48123355 atgcacataaaccaaatcttctacccttttttggatccattttgtt--ttttcaaagaatggataaaagagaaagtactcaaatttctctcacaacagga 48123258  T
Q  321 tgaa 324  Q
    ||||    
T  48123257 tgaa 48123254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 10224592 - 10224661
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  10224592 tccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 10224661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 312
Target Start/End: Original strand, 25936670 - 25936755
Alignment:
Q  228 cataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 312  Q
    |||||||||||||||| |  ||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| | ||||| |||||    
T  25936670 cataaaccaaatcttctattctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccctaatttctctca 25936755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 28705406 - 28705345
Alignment:
Q  169 cggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  28705406 cggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 28705345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Original strand, 45532513 - 45532572
Alignment:
Q  171 gttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  45532513 gttcatccaaagacaactctgctaactcaattccaacatcatcaagcggttcatgcgcat 45532572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 52505276 - 52505333
Alignment:
Q  173 tcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  52505276 tcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 52505333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 25936528 - 25936584
Alignment:
Q  170 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 226  Q
    |||||||| ||||| ||||| ||||| |||||||||||| ||| |||||| ||||||    
T  25936528 ggttcatccaaagacaactctgctaactcaattccaacaccattaagcggttcatgc 25936584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 54433858 - 54433535
Alignment:
Q  17 aaaatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaagaaacacggactgtat 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||    
T  54433858 aaaatcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaggaaacaaggattgtat 54433759  T
Q  117 cagtctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 216  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||    
T  54433758 cagtctcctctcctccgtttccatcatcaaagaacattgtagtctccaactccgattcatctaaagataactcagctaattcaattccaacacaatcaag 54433659  T
Q  217 cgggtcatgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaa 315  Q
    | |||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  54433658 caggtcatgcgcataaaccacatcttcaaccctttttggatccattttatttcttttcaaagaataaataaaagagtaagtactccaatttttctcagaa 54433559  T
Q  316 catgatgaatttcatacctgaact 339  Q
    |||||||||   ||||||||||||    
T  54433558 catgatgaagaacatacctgaact 54433535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 223 - 318
Target Start/End: Complemental strand, 41146136 - 41146041
Alignment:
Q  223 atgcgcataaaccaaatcttcaacccttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacat 318  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||    
T  41146136 atgcacataaaccaaatcttctacccttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacat 41146041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 52122526 - 52122624
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  52122526 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 52122624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 3403161 - 3403256
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  3403161 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 3403256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 8063684 - 8063779
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  8063684 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 8063779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 53322871 - 53322781
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 312  Q
    |||| |||||||||||||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| |||||    
T  53322871 atgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctca 53322781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 31226869 - 31226774
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  31226869 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaattgataaaagagaaagtactcaaatttctctcacaaca 31226774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 14795538 - 14795443
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||| || ||||||||| |||||||| ||||| ||||| ||||    
T  14795538 atgcacataaaccaaattttctaccctttttggatccattttgtttctttttaaagactggataaaagagaaagtactcaaatttctctcacaaca 14795443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 230
Target Start/End: Complemental strand, 53323022 - 53322948
Alignment:
Q  156 tagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    |||| ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  53323022 tagcttccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 53322948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 8063538 - 8063607
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  8063538 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 8063607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 52572721 - 52572637
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 306  Q
    |||| |||||||||||||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||| |||| ||| |||||    
T  52572721 atgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatggataaaagagaaagttctctaattt 52572637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 14795684 - 14795615
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||| | |||||||||| ||||||||||    
T  14795684 tccaaatccggttcatccaaagacaactctgctaactcaattccaatatcatcaagcggttcatgcgcat 14795615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 31227015 - 31226946
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  31227015 tccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 31226946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 41146323 - 41146213
Alignment:
Q  120 tctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgg 219  Q
    ||||||||||||| || ||||||||||   |||    ||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||||||| |||||||||     
T  41146323 tctcctctcctccattcccataatcaagatacaaatcagcttccaaatccggatcatccaaagacaactctgctaactcaattccaacaccatcaagcgt 41146224  T
Q  220 gtcatgcgcat 230  Q
     ||||||||||    
T  41146223 ttcatgcgcat 41146213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 3403015 - 3403084
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| || || ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  3403015 tccaaatccggttcatccaaggacaactttgctaactcaattccaacaccatcaagcggttcatgcgcat 3403084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 52122386 - 52122449
Alignment:
Q  167 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||||  ||||| ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  52122386 tccggttcattcaaagacaactatgctaactcaattccaacaccatcaagcggttcatgcgcat 52122449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 25557932 - 25557609
Alignment:
Q  17 aaaatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaagaaacacggactgtat 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  25557932 aaaatcatcatcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaacattcactacttaagaggaaacactgattgtat 25557833  T
Q  117 cagtctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 216  Q
    | ||||||||||||| |||||||| |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  25557832 cggtctcctctcctctgtttccatcatcaaagaacattaaagcctccaactctggttcatctaaagataactcagctaattcaattccaacaccatcaag 25557733  T
Q  217 cgggtcatgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaa 315  Q
     ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  25557732 tgggtcatgcgcataaaccaaatcttcagccctttttggatccattttatttcttttcaaagaatgaataaaagagtaagtactccaatttctctcagaa 25557633  T
Q  316 catgatgaatttcatacctgaact 339  Q
    |||||||||   ||||||||||||    
T  25557632 catgatgaagaacatacctgaact 25557609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 27397704 - 27397802
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||||||||  ||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  27397704 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttctaagaatggataaaagagaaagtactccaatttctctcacaacatga 27397802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 11830213 - 11830121
Alignment:
Q  229 ataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||| ||| |||||||||||||| ||||| |||||||    
T  11830213 ataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaatgagaaagtactccaatttctctcacaacatga 11830121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 40096188 - 40096093
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  40096188 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 40096093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 38265220 - 38265130
Alignment:
Q  231 aaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    ||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  38265220 aaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 38265130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 36660989 - 36660907
Alignment:
Q  231 aaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 312  Q
    ||||||||||||| ||| |||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| |||||    
T  36660989 aaaccaaatcttctaccatttttggatccattttctttcttttcaaagaatggataaaagagaaagtactccaatttctctca 36660907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 39521301 - 39521206
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  39521301 atgcacataaaccaaatcttctaccctttttggatctattttgtttcttttcaaagaatagataaaagagaaagtactcaaatttctctcacaaca 39521206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 40096334 - 40096265
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  40096334 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 40096265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 27397564 - 27397627
Alignment:
Q  167 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  27397564 tccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 27397627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 11830356 - 11830296
Alignment:
Q  170 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  11830356 ggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 11830296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 11058604 - 11058547
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcg 218  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||    
T  11058604 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcg 11058547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 36661141 - 36661072
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| |||||  |||| |||||||||||| |||||| ||| ||||||||||    
T  36661141 tccaaatccggttcatccaaagacaactcttctaactcaattccaacaccatcaaacggttcatgcgcat 36661072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 8357411 - 8357314
Alignment:
Q  223 atgcgcataaaccaaatcttcaacccttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  8357411 atgcacataaaccaaatcttctacccttttggatctattttatttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 8357314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 1036403 - 1036498
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  1036403 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 1036498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 7188367 - 7188462
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  7188367 atgcacataaaccaaatcttctaccctttttggatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctcacaaca 7188462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 1036257 - 1036326
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  1036257 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 1036326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 7188221 - 7188290
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  7188221 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 7188290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 8357557 - 8357488
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  8357557 tccaaatcaggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 8357488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 22989068 - 22989137
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||  ||||||||||    
T  22989068 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaagcgattcatgcgcat 22989137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 23799328 - 23799259
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||  ||||||||||    
T  23799328 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaagcgattcatgcgcat 23799259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 25257137 - 25257034
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatgat 321  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| ||||||| |||||| ||||| |||||||     
T  25257137 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtactgcaatttctctcacaacatgag 25257038  T
Q  322 gaat 325  Q
    ||||    
T  25257037 gaat 25257034  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 8132701 - 8132606
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  8132701 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 8132606  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 320
Target Start/End: Complemental strand, 30324235 - 30324142
Alignment:
Q  228 cataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||||||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  30324235 cataaaccaaatattctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacatga 30324142  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 6916451 - 6916546
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  6916451 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 6916546  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 38330968 - 38330873
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  38330968 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 38330873  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 52895290 - 52895385
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  52895290 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 52895385  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 28658895 - 28658990
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| | |||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  28658895 atgcacataaaccaaatcttctatcctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactctaatttctctcacaaca 28658990  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 1043693 - 1043595
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||| ||||||||| |||||  | ||||| ||||| |||||||    
T  1043693 atgcacataaaccaaatcttctaccctttttggatctattttgtttcttttcaaagaatggataaaagagaaagtatccaaatttctctcacaacatga 1043595  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 3427382 - 3427296
Alignment:
Q  232 aaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  3427382 aaccaaattttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 3427296  T

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Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 5984706 - 5984616
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 312  Q
    |||| |||||||||||||||  |||| |||| |||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| |||||    
T  5984706 atgcacataaaccaaatcttataccctttttagatccattttgtttctttttaaagaatggataaaagagaaagtactcaaatttctctca 5984616  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 6916305 - 6916374
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  6916305 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 6916374  T

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Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 8132847 - 8132778
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  8132847 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 8132778  T

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Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 38331114 - 38331045
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  38331114 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 38331045  T

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Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 52895144 - 52895213
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  52895144 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 52895213  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 25257283 - 25257214
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| |||||  |||| |||||||||||| |||||||||| ||||||||||    
T  25257283 tccaaatccggttcatccaaagacaactcttctaactcaattccaacatcatcaagcggttcatgcgcat 25257214  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 5984842 - 5984783
Alignment:
Q  171 gttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  5984842 gttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 5984783  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 28948650 - 28948719
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| |||| |||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||| ||||    
T  28948650 tccaaatccgattcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgtgcat 28948719  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 30324385 - 30324317
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||| ||||| |||||||||| ||||||||||    
T  30324385 tccaaatccggttcatccaaagacaactctgctaactcaatt-caacatcatcaagcggttcatgcgcat 30324317  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 3427515 - 3427460
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 216  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||    
T  3427515 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaag 3427460  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 1043815 - 1043770
Alignment:
Q  185 aactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  1043815 aactctgctaactcaattccaacaccatcaagcggttcatgcgcat 1043770  T

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Target: scaffold0177 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 25207 - 25309
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatgat 321  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| ||||||||    
T  25207 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcaaaacatgat 25306  T
Q  322 gaa 324  Q
    |||    
T  25307 gaa 25309  T

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Target: scaffold0177; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 25069 - 25129
Alignment:
Q  170 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  25069 ggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 25129  T

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Target: scaffold0037 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 27373 - 27471
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  27373 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcacaacatga 27471  T

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Target: scaffold0037; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 27236 - 27296
Alignment:
Q  170 ggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  27236 ggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 27296  T

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Target: scaffold0112 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 318
Target Start/End: Original strand, 41671 - 41767
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacat 318  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||||||||| ||||| |||||    
T  41671 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactccaatttctctcataacat 41767  T

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Target: scaffold0112; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 41533 - 41594
Alignment:
Q  169 cggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||| ||||| ||||| ||||| |||||||||||| ||||||| || ||||||||||    
T  41533 cggttcatccaaagacaactctgctaactcaattccaacaccatcaagaggttcatgcgcat 41594  T

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Target: scaffold0640 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 7744 - 7842
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  7744 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 7842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 7604 - 7667
Alignment:
Q  167 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||||  ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  7604 tccggttcattcaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 32707488 - 32707586
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  32707488 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 32707586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 1639381 - 1639474
Alignment:
Q  228 cataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| |||||| || |||||||||||||| ||||| |||||||    
T  1639381 cataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaatagaaagtactccaatttctctcacaacatga 1639474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 9792827 - 9792732
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  9792827 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 9792732  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 12852641 - 12852546
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  12852641 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 12852546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 30918883 - 30918788
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  30918883 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 30918788  T

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Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 306
Target Start/End: Original strand, 26794580 - 26794664
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 306  Q
    |||| |||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||| |||||    
T  26794580 atgcacataaaccaaatcttctaccctttttggatccattttatttcttttcaaagaatggataaaagagaaagtgctcaaattt 26794664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 33830292 - 33830197
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| ||||||||||| |||  |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  33830292 atgcacataaaccaaagcttttaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 33830197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 9792973 - 9792904
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  9792973 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 9792904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 26794434 - 26794503
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| || |||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  26794434 tccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 26794503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 1639236 - 1639299
Alignment:
Q  167 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||| | ||||||||||    
T  1639236 tccggttcatccaaagacaactctgctaactcaattccaacaccatcaagctgttcatgcgcat 1639299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 12852787 - 12852718
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||| ||||||| ||||| ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  12852787 tccaaatccagttcatccaaagacaactatgctaactcaattccaacaccatcaagcggatcatgcgcat 12852718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 39690172 - 39690241
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| |||| |||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||| ||||    
T  39690172 tccaaatccgattcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgtgcat 39690241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 32707348 - 32707411
Alignment:
Q  167 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||||||||  ||||| ||||  ||||| |||||||||||| |||||||||| ||||||||||    
T  32707348 tccggttcattcaaagacaactatgctaactcaattccaacaccatcaagcggttcatgcgcat 32707411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 33830432 - 33830373
Alignment:
Q  167 tccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 226  Q
    ||||||||||| ||||| | ||| ||||| |||||||||||| |||||||||| ||||||    
T  33830432 tccggttcatccaaagacagctctgctaactcaattccaacaccatcaagcggttcatgc 33830373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 4170109 - 4170207
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  4170109 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 4170207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 38601977 - 38602075
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  38601977 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 38602075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 33325278 - 33325186
Alignment:
Q  229 ataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  33325278 ataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 33325186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 6497259 - 6497357
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||| |||| |||||||| ||||||||  |||||||||||||| ||||| |||||||    
T  6497259 atgcacataaaccaaatcttctaccctttttggatccattttgtttattttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatga 6497357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 223 - 306
Target Start/End: Complemental strand, 22484798 - 22484714
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaattt 306  Q
    |||| |||||||||||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||| |||||||| |||||    
T  22484798 atgcacataaaccaaatcttctaccccttttggatccattttgtttcttttaaaagaatggataaaagagaaagtactcaaattt 22484714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Complemental strand, 6124709 - 6124623
Alignment:
Q  232 aaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  6124709 aaccaaattttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 6124623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 40308425 - 40308515
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctca 312  Q
    |||| |||||||||||||||  |||||||| ||||||||||| |||||||| |||||||| ||| ||||| |||||||| ||||| |||||    
T  40308425 atgcacataaaccaaatcttataccctttttggatccattttgtttcttttcaaagaatggatagaagagaaagtactcaaatttctctca 40308515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 40308279 - 40308348
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  40308279 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 40308348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 230
Target Start/End: Original strand, 4169922 - 4170032
Alignment:
Q  120 tctcctctcctccgtttccataatcaaagaacattgtagcctccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgg 219  Q
    ||||||||||||| ||||||| |||||   |||    ||| ||||| || |||||||| ||||| ||||| ||||| |||||||||||| ||||||||||    
T  4169922 tctcctctcctccatttccatcatcaagatacaaatcagcttccaaatctggttcatccaaagacaactctgctaactcaattccaacaccatcaagcgg 4170021  T
Q  220 gtcatgcgcat 230  Q
     ||||||||||    
T  4170022 ttcatgcgcat 4170032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 6497113 - 6497178
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 226  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||    
T  6497113 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgc 6497178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 32750822 - 32750887
Alignment:
Q  17 aaaatcatcttcagcactacccaaaaaggacatagtttagctattcataaagaacatcatagtccaac 84  Q
    ||||||||| |||  |||||||||||| ||||  |||||||||| |||||||||||||||||||||||    
T  32750822 aaaatcatcatcattactacccaaaaaagaca--gtttagctatccataaagaacatcatagtccaac 32750887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 22484944 - 22484881
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcat 224  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||    
T  22484944 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcat 22484881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 6124842 - 6124787
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 216  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||    
T  6124842 tccaaatccggttcatccaaagacaactctgctaactcaattccaacatcatcaag 6124787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 30024 - 30119
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  30024 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 30119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 4246458 - 4246363
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  4246458 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 4246363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 28876154 - 28876249
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  28876154 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 28876249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 34900958 - 34901053
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  34900958 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 34901053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 2872574 - 2872672
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||| |||| |||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  2872574 atgcacataaaccaaatcttctaccctttttcgatccattttgtttcttttcaaagaatggataaaagagaaagtaccccaatttctctcacaacatga 2872672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 12580132 - 12580222
Alignment:
Q  231 aaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    ||||||||||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||| ||||||| ||||| |||||||    
T  12580132 aaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtacaccaatttctctcacaacatga 12580222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 36483954 - 36483856
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| |||||||| ||||||||||| ||| |||| |||||||| ||||||||  |||||||||||||| ||||| |||||||    
T  36483954 atgcacataaaccaaatcttctaccctttttggatccattttgtttattttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatga 36483856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 320
Target Start/End: Complemental strand, 37669099 - 37669001
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaacatga 320  Q
    |||| |||||||||||||||| ||| |||| ||||||||||| |||||||| |||||||| ||||||||  |||||||||||||| ||||| |||||||    
T  37669099 atgcacataaaccaaatcttctaccttttttggatccattttgtttcttttcaaagaatggataaaagaaaaagtactccaatttctctcacaacatga 37669001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 317
Target Start/End: Complemental strand, 5539951 - 5539856
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||||||  ||||||||| |||||||| ||||| ||||| ||||    
T  5539951 atgcacataaaccaaatcttctaccctttttggatccattttgtttcttttcaaagaatagataaaagagaaagtactcaaatttatctcacaaca 5539856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 45216809 - 45216904
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccc-ttttggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||||||| |||| ||||| ||||||||| ||||||||  ||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  45216809 atgcacataaaccaaatcttctaccctttttgaatccattttgtttctttttcaagaatggataaaagagaaagtactcaaatttctctcacaaca 45216904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 43771290 - 43771376
Alignment:
Q  232 aaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||||||| ||| |||||||| ||||||||||| |||||||| |||||||| ||||||||| |||||||| ||||| ||||| ||||    
T  43771290 aaccaaattttctaccctttttggatccattttgtttcttttcaaagaatggataaaagagaaagtactcaaatttctctcacaaca 43771376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 4246604 - 4246535
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  4246604 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 4246535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Complemental strand, 5540097 - 5540028
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  5540097 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 5540028  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 34900812 - 34900881
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| ||||||||||    
T  34900812 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcgcat 34900881  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 45216663 - 45216732
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||||| |||| |||||    
T  45216663 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcggttcatacgcat 45216732  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 2872440 - 2872494
Alignment:
Q  173 tcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcg 227  Q
    ||||||||||| ||||| ||||| |||||||||||| |||||||||| |||||||    
T  2872440 tcatctaaagacaactctgctaactcaattccaacaccatcaagcggttcatgcg 2872494  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 37669245 - 37669187
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgg 219  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||    
T  37669245 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaagcgg 37669187  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 12579978 - 12580047
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| | ||| ||| | |||||||||||| |||||||||| ||||||||||    
T  12579978 tccaaatccggttcatccaaagacagctctgctgactcaattccaacaccatcaagcggttcatgcgcat 12580047  T

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Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 226
Target Start/End: Complemental strand, 36484100 - 36484035
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgc 226  Q
    ||||| ||||||||||| ||||| ||||| || || |||||||||||| |||||||||| ||||||    
T  36484100 tccaaatccggttcatccaaagacaactctgccaactcaattccaacaccatcaagcggttcatgc 36484035  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 43771157 - 43771212
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaag 216  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||||||    
T  43771157 tccaaatccggttcatccaaagacaactctgctaactcaattccaacaccatcaag 43771212  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 28876019 - 28876077
Alignment:
Q  172 ttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    |||||||||||| ||||| ||||| |||||||||||| ||||||  || ||||||||||    
T  28876019 ttcatctaaagacaactctgctaactcaattccaacaccatcaaatggttcatgcgcat 28876077  T

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Target: scaffold0005 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 317
Target Start/End: Original strand, 44193 - 44288
Alignment:
Q  223 atgcgcataaaccaaatcttcaaccctttt-ggatccattttatttcttttgaaagaatgaataaaagagtaagtactccaatttttctcagaaca 317  Q
    |||| |||||||||||| ||| |||||||| ||||||||||| |||||||| ||||| || ||||||||| |||||||| ||||| ||||| ||||    
T  44193 atgcacataaaccaaattttctaccctttttggatccattttgtttctttttaaagactggataaaagagaaagtactcaaatttctctcacaaca 44288  T

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Target: scaffold0005; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 44047 - 44116
Alignment:
Q  161 tccaactccggttcatctaaagataactcagctaattcaattccaacaacatcaagcgggtcatgcgcat 230  Q
    ||||| ||||||||||| ||||| ||||| ||||| |||||||||| | |||||||||| ||||||||||    
T  44047 tccaaatccggttcatccaaagacaactctgctaactcaattccaatatcatcaagcggttcatgcgcat 44116  T

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