View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3052_low_15 (Length: 334)
Name: NF3052_low_15
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 318
Target Start/End: Original strand, 41876272 - 41876577
Alignment:
| Q |
13 |
aaaatgaaaattgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggag |
112 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876272 |
aaaatgaaaattgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggag |
41876371 |
T |
|
| Q |
113 |
ctgatgatgcagcgcaatctaaagcagctgggaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41876372 |
ctgatgatgcagcgcaatctaaagcagctgggaggataataacattgcctgaggtcaataccatagcagatgggctccgagcatgtctcggaaattttac |
41876471 |
T |
|
| Q |
213 |
atggtaaaatcaaatattttgcaataaatttttgtggtcttacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876472 |
atggtaaaatcaaatattttgcaataaatttttgtggtcttacgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatga |
41876571 |
T |
|
| Q |
313 |
cataat |
318 |
Q |
| |
|
|||||| |
|
|
| T |
41876572 |
cataat |
41876577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 40867761 - 40867588
Alignment:
| Q |
46 |
ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctggga |
145 |
Q |
| |
|
||||||||||| ||||||||| | || |||||| | ||||| |||||||||||||| || ||||| || ||||| ||||| ||||||||||||||||| | |
|
|
| T |
40867761 |
ggagtagcattggctgccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatgacgcagcacaatctaaagcagctggaa |
40867662 |
T |
|
| Q |
146 |
ggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcggaaattttacatggtaa |
219 |
Q |
| |
|
||||||||||| |||| ||| |||||| ||||| |||||||| ||||||| ||| ||| |||| ||||||||| |
|
|
| T |
40867661 |
ggataataacattgcccgagaccaatactatagctgacgggctacgagcatttcttggagatttcacatggtaa |
40867588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 24800462 - 24800358
Alignment:
| Q |
50 |
tagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggat |
149 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
24800462 |
tagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggat |
24800363 |
T |
|
| Q |
150 |
aataa |
154 |
Q |
| |
|
||||| |
|
|
| T |
24800362 |
aataa |
24800358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 24817538 - 24817434
Alignment:
| Q |
50 |
tagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgggaggat |
149 |
Q |
| |
|
||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||||| |
|
|
| T |
24817538 |
tagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagcagccggaaggat |
24817439 |
T |
|
| Q |
150 |
aataa |
154 |
Q |
| |
|
||||| |
|
|
| T |
24817438 |
aataa |
24817434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 9736090 - 9735930
Alignment:
| Q |
46 |
ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatg--atgcagcgcaatctaaagcagctgg |
143 |
Q |
| |
|
||||||||| |||||||||| || |||||| || ||||| | ||||||| |||||||| ||||||||||||| ||||| |||||||||| || | | |
|
|
| T |
9736090 |
ggagtagcaatagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaagacaacaag |
9735991 |
T |
|
| Q |
144 |
gaggataataacactgcctgaggtcaataccatagcagacgggctccgagcatgtctcgga |
204 |
Q |
| |
|
||||||||||| | |||||||| | |||| ||||||||| |||| ||||||| ||||||| |
|
|
| T |
9735990 |
gaggataataaaattgcctgagataaatattatagcagacaggcttcgagcatttctcgga |
9735930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 9735855 - 9735792
Alignment:
| Q |
255 |
cgattaacttgtcgaattttctatgacacaggcctgttgtacgagatcttgttgatgacataat |
318 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||| |||||| |||||||||||| || ||||| |
|
|
| T |
9735855 |
cgattaatttgtcgagttttctgtgacacaggcctattgtacaagatcttgttgaagatataat |
9735792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University