View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_17 (Length: 324)

Name: NF3052_low_17
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_17
NF3052_low_17
[»] chr1 (2 HSPs)
chr1 (1-308)||(12505084-12505391)
chr1 (1-308)||(12490539-12490846)


Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12505084 - 12505391
Alignment:
Q  1 tggcctccctttcatcggaccgattttggaccgacatgactttttctacaacaaaggcagagacaaattcttctcaactagaattcaaaaatacaattca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  12505084 tggcctccctttcatcggaccgattttggaccgacatgactttttctataaccaaggcagagacaaattcttctcaacaagaatacaaaaatacaattca 12505183  T
Q  101 acagtcttcaaaaccaacatgccaccaggtccattcatttcctcaaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12505184 acagtcttcaaaaccaacatgccaccaggtccattcatttcctcaaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgaca 12505283  T
Q  201 acaaaaaagtcgagaaatacaatgtcttcgatggtaccttcatgccatcgatagacttcaccggaggctaccgtgtctgtcctttcttagacacaactga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12505284 acaaaaaagtcgagaaatacaatgtcttcgatggtaccttcatgccatcgatagacttcactggaggctaccgtgtctgtcctttcttagacacaactga 12505383  T
Q  301 accaaacc 308  Q
    ||||||||    
T  12505384 accaaacc 12505391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 12490539 - 12490846
Alignment:
Q  1 tggcctccctttcatcggaccgattttggaccgacatgactttttctacaacaaaggcagagacaaattcttctcaactagaattcaaaaatacaattca 100  Q
    |||||||||||||||||||||||| || |||||||| ||||  ||||||||| |||| |||||||||||||||||||| ||||| ||||||||||| |||    
T  12490539 tggcctccctttcatcggaccgatcttcgaccgacacgactacttctacaaccaaggaagagacaaattcttctcaacaagaatccaaaaatacaactca 12490638  T
Q  101 acagtcttcaaaaccaacatgccaccaggtccattcatttcctcaaacccaagagtcatagcactcttagatgcttcatcgtttccgatcctcttcgaca 200  Q
    ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||| || ||||| ||||||||||    
T  12490639 acaatcttcagaaccaacatgccaccaggtcccttcatttcctcaaacccaagagtcatagcactcttagacgccgcatctttcccgatactcttcgaca 12490738  T
Q  201 acaaaaaagtcgagaaatacaatgtcttcgatggtaccttcatgccatcgatagacttcaccggaggctaccgtgtctgtcctttcttagacacaactga 300  Q
    ||||||||||||| |||  ||| ||| |||| || || |||||||| |||| | | |||||||| || |||||||| ||| ||| | |||||||||||||    
T  12490739 acaaaaaagtcgaaaaactcaacgtcctcgacggcacattcatgccgtcgacaaaattcaccggtggttaccgtgtatgtgcttacctagacacaactga 12490838  T
Q  301 accaaacc 308  Q
    ||||||||    
T  12490839 accaaacc 12490846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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