View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3052_low_18 (Length: 313)
Name: NF3052_low_18
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 120 - 307
Target Start/End: Original strand, 42030237 - 42030434
Alignment:
| Q |
120 |
taggttctaaaataaattacacagtacataaaaattgatctcacgccacttaaaccaacccccttgttgtc----------acgccagattacatatatg |
209 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42030237 |
tagggtctaaaataaattacacagtacataaaaattgatctcacgccacttaacccaacccccttgttgtccacgcggaccacgccagattacatatatg |
42030336 |
T |
|
| Q |
210 |
gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaataacacaaaaccctcttcacttttcttctctc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42030337 |
gtaacgctcttaccccttgtccacgccaccttatattacgctcataaaccctttgtctgtcatcaatatcacaaaaccctcttcacttttcttctctc |
42030434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 42030140 - 42030212
Alignment:
| Q |
18 |
acttataacgtccgattgctggcttttctcatgacaaacaatgcatacatacctattgtccaccagaatgcaa |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42030140 |
acttataacgtccgattgctggcttttctcatgacaaccaatgcatacatacctattgtccaccagaatgcaa |
42030212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University