View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_19 (Length: 312)
Name: NF3052_low_19
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 42825173 - 42825474
Alignment:
| Q |
1 |
ttcatccacactagttgctttctttctttttgaattactactatctttgatatctctgttaggtcctctattgtctttagacctcgtggagtacctaggt |
100 |
Q |
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| T |
42825173 |
ttcatccacactagttgctttctttctttttgaattactactatctttgatatctctgttaggtcctctattgtctttagacctcgtggagtacctaggt |
42825272 |
T |
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| Q |
101 |
ttcttacctttcccaaccttagcaacaagttccttatcatcttcactatcaccattccacacgtcatcctcgttgtctctaaatactttccgctttccct |
200 |
Q |
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| T |
42825273 |
ttcttacctttcccaaccttagcaacaagttccttatcatcttcactatcaccattccacacgtcatcctcgttgtctctaaatactttccgctttccct |
42825372 |
T |
|
| Q |
201 |
ttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgccctt |
300 |
Q |
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| T |
42825373 |
ttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgccctt |
42825472 |
T |
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| Q |
301 |
tg |
302 |
Q |
| |
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|| |
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| T |
42825473 |
tg |
42825474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 162 - 277
Target Start/End: Original strand, 42846088 - 42846203
Alignment:
| Q |
162 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgag |
261 |
Q |
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|||||||||||||||||||||||||||| | ||||||||| |||||| | |||||| ||||||||| ||||| |||||||||||||||| |||| |
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| T |
42846088 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctttgctaggctctgcgag |
42846187 |
T |
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| Q |
262 |
gaaccactcccaattc |
277 |
Q |
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| T |
42846188 |
ggaccactcccaattc |
42846203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 42835460 - 42835555
Alignment:
| Q |
210 |
ttttctcctcaaaatcatcctcatcctcac----tttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgcccttt |
301 |
Q |
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||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |
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| T |
42835460 |
ttttctcctcaaaatcatcctcatcattccctgctttctttgctaggctcctcgaggaaccactcttaattctccacattcccgattatgtccttt |
42835555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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