View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_2 (Length: 778)
Name: NF3052_low_2
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 330 - 762
Target Start/End: Complemental strand, 27306934 - 27306502
Alignment:
| Q |
330 |
agacacaaagttatataggaatctttctaacaaattgttatgggccatattttggtggctgaatggatgatcatagcttcaaattgtttaatgtttaccc |
429 |
Q |
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| T |
27306934 |
agacaaaaagttatataggaatctttctaacaaattgttatgggccatattttggtggctgaatggatgatcatagcttcaaattgtttaataattaccc |
27306835 |
T |
|
| Q |
430 |
tttatttggttgctttgaaacatattcacaaataatggatcagaaacaaagccaatcaatcatgtgttgtgtgcattgatgaagttcacgagtggagact |
529 |
Q |
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| T |
27306834 |
tttatttggttgctttgaaacatattcacaaataatggatcagaagcaaagccaatcaatcatgtgttgtgtgcattgatgaagttcacgagtggagact |
27306735 |
T |
|
| Q |
530 |
taatagttcacgagcacattaacacaaaaagacggctaacaaagatgtgtggtacacctttttctgattattgttggtgccaaatagtataggaaaaaat |
629 |
Q |
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| T |
27306734 |
taatagttcacgagcacattaacacaaaaagacggctaacaaagatgtgtggtacacctttttctgattattgttggtaccaaatagtataggaaaaaat |
27306635 |
T |
|
| Q |
630 |
tataatatgcaagtagggcaaatttggaaataaagaaataataatgtataccaaattgataagtgtacgtgaaaccaaaattttaaaataaaaattgata |
729 |
Q |
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| T |
27306634 |
tataatatgcaagtagggcaaatttggaaataaagaaataataatgtataccaaattgataagtgtacgtgaaaccaaaattttaaaataaaaattgata |
27306535 |
T |
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| Q |
730 |
agtgtacgtgccagtttcttgtgacttggtaag |
762 |
Q |
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| T |
27306534 |
agtgtacgtgccagtttcttgtgacttggtaag |
27306502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 313
Target Start/End: Complemental strand, 27307295 - 27306986
Alignment:
| Q |
5 |
atatcaataattca-taataaaaatcttgaataactaatttccttttaannnnnnnctactgaatatgatagcccaaattggatatataaaatgaaaatt |
103 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27307295 |
atatcaataattcaataataaaaatcttgaataactaatttccttttaatttttttcaactgaatatgatagcccaaattggatatataaaatgaaaatg |
27307196 |
T |
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| Q |
104 |
cgaccccacattaataaacgggttccatagtatctaatactataataattaattcttattgagaagagatgtataattaactatgaagtacatacataaa |
203 |
Q |
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| T |
27307195 |
tgaccccacattaataaacgggttccatagtatctaatgctataataatcaattcttattgagaagagatgtataattaacaatgaaggacatacataaa |
27307096 |
T |
|
| Q |
204 |
cacctgacacaatacaaatattgatacgtcgacaatgataataattataagtgtcgtgtcagagtcggataccaacacttatccgataccaagacatgtc |
303 |
Q |
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| T |
27307095 |
cacctgatacgatacaaacactgatacgtcgacaatgataataattataagtgttgtgtcaaagttggataccaacacttatccgataccaagacacgtc |
27306996 |
T |
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| Q |
304 |
taatccaaaa |
313 |
Q |
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|||||||||| |
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| T |
27306995 |
taatccaaaa |
27306986 |
T |
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