View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_21 (Length: 307)

Name: NF3052_low_21
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_21
NF3052_low_21
[»] chr4 (1 HSPs)
chr4 (18-307)||(55941444-55941731)


Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 55941731 - 55941444
Alignment:
Q  18 aggaagtcatgttcttctcctataaatatataggagaatttgcacggagttttgtcatcttatccaagagttata--gtgagaggttctagcaatcctct 115  Q
    ||||||||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  55941731 aggaagtcacgttcttctcctataaata----ggagaatttgcacggagttttgtcatcttatccaagagttatatagcgagaggttctagcaatcctct 55941636  T
Q  116 ttgagtgaaagttttatatccatcttagatttgtgagagttgagagatatggtatatcatatccgaattgagtgagattgagagagaaactcttgtatca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55941635 ttgagtgaaagttttatatccatcttagatttgtgagagttgagagatatggtatatcatatccgaattgagtgagattgagagagaaactcttgtatca 55941536  T
Q  216 ggagagttattttaatcctacttttctatatgcgaaatattttactgaattgaatcccgtggttctatccttttacattgaggaggttttcc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  55941535 ggagagttattttaatcctacttttctatatgcgaaatattttactgaattgaatcccgtggttctatccttttacattgagaaggttttcc 55941444  T

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