View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_23 (Length: 292)
Name: NF3052_low_23
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 4 - 245
Target Start/End: Original strand, 45130463 - 45130707
Alignment:
| Q |
4 |
ttctagtctattataaatatgattacaattttaacttttttaatggcaggcctcaaatattattggtgttgaaagagatgtgacagag----------ag |
93 |
Q |
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| T |
45130463 |
ttctagtctattataaatatgattacaattttaacttttttaatggcaggcctgaaatatt---ggtgttgaaagagatgtgacagagagagagagagag |
45130559 |
T |
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| Q |
94 |
caattaccacggtgtgctgggtcttgtctatataactattttcagcagcaaaaagataattattactgtatacttggaatacttcttcaaactcaccatg |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45130560 |
caattaccacggtgtgctgggtcttgtctatataactattttcagcaacaaaaagataattattactgtatacttggaatacttcttcaaactcaccatg |
45130659 |
T |
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| Q |
194 |
aatcaaaatatatatgtaattagtttgatgttatgaaaaagaaattagatat |
245 |
Q |
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||||||| |||||||||| ||||||||||||| |||||||||||||||| |
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| T |
45130660 |
aatcaaa----atatgtaattcgtttgatgttatgtaaaagaaattagatat |
45130707 |
T |
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