View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3052_low_3 (Length: 740)
Name: NF3052_low_3
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3052_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 656; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 16 - 730
Target Start/End: Original strand, 7332959 - 7333673
Alignment:
| Q |
16 |
caagaattagatcatgttcatgaataaattccattgtgcaataaagtataatcctcgtcacatagcatttgttacatcagcaaaggtctaatgagaactg |
115 |
Q |
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| T |
7332959 |
caagaattagatcatgttcatgaataaattccattgtgcaataaagtataatcctcgtcacatagcatttgttacatcagcaaaggtctaatgagaactg |
7333058 |
T |
|
| Q |
116 |
acaactagattagctactcagaaaagtgcatttgctaaaaacaaagtgtcacacatgcagatctttttggagcaatgaacacgaacattggaaatagtaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333059 |
acaactagattagctactcagaaaagtgcatttgctaaaaacaaagtgtcacacatgcagatctttttggagcaatgaacacgaacattggaaatagtaa |
7333158 |
T |
|
| Q |
216 |
ggtgaggttcttcaggaaaaggtgaatgtgcatagaactttatgttagtaaattcaaagtttgggcaagnnnnnnnnnnnnnnnnntttactcggtaact |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7333159 |
ggtgaggttcttcaggaaaaggtgaatgtgcatagaactttatgttagtaaattcaaagtttgggcaagaaaaaataaatgaaaaatttactcggtaact |
7333258 |
T |
|
| Q |
316 |
gtggttttggttcagttcagcatggaaaaccaaactggtttgcaagttgaactctatcaaatcaaaccagttgagaatcaacccaattcggaccaattct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7333259 |
gtggttttggttcagttcagcatggaaaaccaaactggtttgcaagttgaactctatcaaatcaaaccagttgagaatcaacccaattcggaccgattct |
7333358 |
T |
|
| Q |
416 |
gattgatgcaccatgtttcgtgttttacaaccgaactttaaaatgaattttgttttttcttatatatctagaaaatgatagaaaccgaaaacttaagtat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333359 |
gattgatgcaccatgtttcgtgttttacaaccgaactttaaaatgaattttgttttttcttatatatctagaaaatgatagaaaccgaaaacttaagtat |
7333458 |
T |
|
| Q |
516 |
cagtagaatagagattttattgatggaagtatgagctaaaagctctgacagcaacaaaagaattaacaaagggaaataccagagtctatgactcctaccc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7333459 |
cagtagaatagagattttattgatggaagtatgagctaaaagctctgacagcaacaaaagaattaacaaagggaaataccagagtctatgactcctaccc |
7333558 |
T |
|
| Q |
616 |
gagataagtctccactccctatcacctcattacatactctctcctttaaccacctagagaatattcgtgccaccttctttttccagacatacactttcca |
715 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7333559 |
gagataagtctccactccctatcacctcattacatactctctcctttaaccacctagagaatattcgtgccaccttctttttccagacataaactttcca |
7333658 |
T |
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| Q |
716 |
aatagctggcctatg |
730 |
Q |
| |
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||||||||||||||| |
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| T |
7333659 |
aatagctggcctatg |
7333673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 2643631 - 2643752
Alignment:
| Q |
164 |
tcacacatgcaga-tctttttggagcaatgaacacgaacattggaaatagtaaggtgaggttcttcaggaaaaggtgaatgtgcatagaactttatgtta |
262 |
Q |
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||||||||||||| ||||| ||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
2643631 |
tcacacatgcagaatctttacggagcaatgaacatgaacattgaaaacagtagggtgaggttcttcaggaaaaggtgaatgagcatagaactttacgtta |
2643730 |
T |
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| Q |
263 |
gtaaattcaaagtttgggcaag |
284 |
Q |
| |
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|||| |||||||||||||||| |
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| T |
2643731 |
ctaaactcaaagtttgggcaag |
2643752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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