View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3052_low_30 (Length: 236)

Name: NF3052_low_30
Description: NF3052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3052_low_30
NF3052_low_30
[»] chr1 (5 HSPs)
chr1 (35-236)||(235223-235424)
chr1 (11-235)||(251284-251499)
chr1 (1-236)||(8814230-8814468)
chr1 (1-236)||(246877-247103)
chr1 (135-236)||(231591-231692)
[»] chr6 (13 HSPs)
chr6 (13-84)||(7012988-7013059)
chr6 (1-84)||(9170970-9171053)
chr6 (115-208)||(7029851-7029944)
chr6 (136-233)||(7046852-7046949)
chr6 (136-236)||(7041506-7041606)
chr6 (13-84)||(7029981-7030052)
chr6 (15-84)||(212966-213035)
chr6 (115-208)||(7025794-7025887)
chr6 (136-208)||(7012858-7012930)
chr6 (13-83)||(7025925-7025995)
chr6 (13-71)||(9159387-9159445)
chr6 (115-208)||(9170855-9170948)
chr6 (115-208)||(9159480-9159573)
[»] chr5 (2 HSPs)
chr5 (1-84)||(33541811-33541894)
chr5 (11-84)||(18571270-18571343)
[»] chr3 (5 HSPs)
chr3 (135-236)||(9343855-9343956)
chr3 (20-84)||(9494719-9494783)
chr3 (135-236)||(9448324-9448425)
chr3 (148-236)||(41985638-41985726)
chr3 (143-208)||(9695629-9695694)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 35 - 236
Target Start/End: Complemental strand, 235424 - 235223
Alignment:
35 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgtccatgagattcatgaagatgctgatgattatgatcgtgcaaggattaac 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
235424 taaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgaccatgagattgatgaagatgctgatgattatgatcgtgcaaggattaac 235325  T
135 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctg 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
235324 gtgtttaagcttaatgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctg 235225  T
235 ct 236  Q
    ||    
235224 ct 235223  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 251284 - 251499
Alignment:
11 atctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgtccatgagattcatgaagatgctgat 110  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||   |||   ||    ||| | | |||||    
251284 atctttggttggtggtggagatattaaattcttggtggagagcgacagtgatttgttgttagcagatgttta---ccagcggaggtttgatgctcctgat 251380  T
111 gattatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggat 210  Q
    ||  || ||     ||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||| |||||||||||||||| |||||||| |    
251381 gaacat-at-----aaggattaacgtgtttaagcttaatgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggt 251474  T
211 tgctatgttcgttttctgcttctgc 235  Q
     ||||||||| ||||||| ||||||    
251475 ggctatgttcattttctgtttctgc 251499  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8814230 - 8814468
Alignment:
1 tagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgtccatgagattcatga 100  Q
    |||| |||| ||||||| ||| ||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||   || ||| ||| ||||    
8814230 tagtggctgaatctttgcttgctggcggggatattaaattcctagtggagagcaagggtgatttgttgttagcagatgtttacaaccgtgatattgatga 8814329  T
101 agatgctgatgattatgatcgtgcaaggatta---------acgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggat 191  Q
          | |||||||||||||||| ||||||          || ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||    
8814330 ------ttatgattatgatcgtgccaggattggcaggattgacatgtttaagcttaacgaaaaggagaagaagtgggtgaagttggcgaatttaggggat 8814423  T
192 agagttttcttcttgggattgctatgttcgttttctgcttctgct 236  Q
    |||||||| || ||||| |   | ||||| |||||||||||||||    
8814424 agagttttgtttttggggtccttgtgttcattttctgcttctgct 8814468  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 247103 - 246877
Alignment:
1 tagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatgtccatgagattcatga 100  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||  ||||||||| |  |||  | || ||||    
247103 tagttgctgaatctttggttggtggtggagatattaaattcttagtggagagcaagggtgatttgttgttaatagatgtttacgaacataggtttgatga 247004  T
101 agat-gctgatgattatgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagtttt 199  Q
     ||| || |||          ||| ||||||| || ||||||||||||||| || ||||||||| ||| |||||||||| |||||||| |||| ||||||    
247003 tgatcgcggat----------gtgtaaggattgacttgtttaagcttaatgcaagggagaagaaatgggtgaagttggctaatttaggagatacagtttt 246914  T
200 cttcttgggattgctatgttcgttttctgcttctgct 236  Q
     |||||||| ||| | || || |||||||||||||||    
246913 gttcttggggttgttctggtcattttctgcttctgct 246877  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 231692 - 231591
Alignment:
135 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctg 234  Q
    ||||||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||| |||||| |||||||| |  |||||||| |||||||||||||    
231692 gtgtttaagctcaatgcaaaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctg 231593  T
235 ct 236  Q
    ||    
231592 ct 231591  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7013059 - 7012988
Alignment:
13 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    ||||||||||||| ||||| || |||||||||||||||||||| |  |||||||||||||||||||||||||    
7013059 ctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgttagcagatgtttatg 7012988  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9171053 - 9170970
Alignment:
1 tagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    ||||||||| | ||||||||||||||||| | || |||||||||||||||||||| || |||||||||||||| || |||||||    
9171053 tagttgctgaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgttagcggacgtttatg 9170970  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 7029944 - 7029851
Alignment:
115 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 208  Q
    ||||||||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | ||| |||||||| ||||| ||||||||    
7029944 atgatcgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttggg 7029851  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 233
Target Start/End: Complemental strand, 7046949 - 7046852
Alignment:
136 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttct 233  Q
    |||||||||||||||| ||||||||||||||| |||||||  | | ||||||||||| |||||| ||||||||  |   |||||||||||||||||||    
7046949 tgtttaagcttaatgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttct 7046852  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 136 - 236
Target Start/End: Complemental strand, 7041606 - 7041506
Alignment:
136 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttgggattgctatgttcgttttctgcttctgc 235  Q
    ||||||| |||||||| ||||||||||||||| |||||||| | | |||||||||||| ||||| |||||||||    |||||||||| |||| ||||||    
7041606 tgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgtttctgc 7041507  T
236 t 236  Q
    |    
7041506 t 7041506  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7030052 - 7029981
Alignment:
13 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    ||||||||||||||||  || | |||||||||||||||||||| || |||||||||||||| ||||||||||    
7030052 ctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgttagcggatgtttatg 7029981  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 212966 - 213035
Alignment:
15 ttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    ||||||| |||||| |  || |||||||||||||||||||| |||||||||||||||| |||||||||||    
212966 ttggttgatggtggaggcatgaaattcttagtggagagcgagggtgatttgttgttagtagatgtttatg 213035  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 7025887 - 7025794
Alignment:
115 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 208  Q
    ||||| ||| ||||||| |  |||||||||||||||| ||||||||||||||| |||||||| | | |||||| ||||| ||||| ||||||||    
7025887 atgattgtgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggg 7025794  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 7012930 - 7012858
Alignment:
136 tgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 208  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||| |||||| |||||  |||| ||||||||    
7012930 tgtttaagcttaatgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggg 7012858  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 7025995 - 7025925
Alignment:
13 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttat 83  Q
    ||||| |||| || ||||| || |||||||||||||||||||| || |||||||||||||| |||||||||    
7025995 ctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgttagcggatgtttat 7025925  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 9159387 - 9159445
Alignment:
13 ctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgtta 71  Q
    ||||||||||||||||| | || |||||||||||||||||||| || ||||||||||||    
9159387 ctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgtta 9159445  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 9170948 - 9170855
Alignment:
115 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 208  Q
    |||||| || ||||||| |  |||||||||||||||| ||||||||||||||| |||| ||  | | |||||||||||| ||||| ||||||||    
9170948 atgatcctgtaaggattgatttgtttaagcttaatgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggg 9170855  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 9159480 - 9159573
Alignment:
115 atgatcgtgcaaggattaacgtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 208  Q
    |||||| || ||||||| |  ||||||||||||| || ||||||||||||||| |||| ||  | | |||||||||||| ||||| ||||||||    
9159480 atgatcctgtaaggattgatttgtttaagcttaacgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggg 9159573  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 33541894 - 33541811
Alignment:
1 tagttgctgtatctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    |||| |||| |||||||||||||||||| ||  | |||||||||||||||||| | ||||||||||||||||  ||||||||||    
33541894 tagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgttagtggatgtttatg 33541811  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 18571343 - 18571270
Alignment:
11 atctttggttggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    ||||||||||| ||||||| | || |||||||| ||||||||||| || ||| |||||||||| || |||||||    
18571343 atctttggttgttggtgggaacatgaaattcttggtggagagcgagggcgatctgttgttagctgacgtttatg 18571270  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 9343956 - 9343855
Alignment:
135 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttct 233  Q
    |||||||||||| |||| | ||||||||||||| |||||||  ||| |||||||||||| ||||| |||||||| | ||  |||||||||||||||||||    
9343956 gtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatga-atgttcgttttctgcttct 9343858  T
234 gct 236  Q
    |||    
9343857 gct 9343855  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 9494719 - 9494783
Alignment:
20 tggtggtggggatattaaattcttagtggagagcgacggtgatttgttgttagcagatgtttatg 84  Q
    |||||| ||||| || ||||||||||| ||||| ||||||||||||||||||| |||||||||||    
9494719 tggtgggggggacatcaaattcttagtcgagagtgacggtgatttgttgttagtagatgtttatg 9494783  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 236
Target Start/End: Complemental strand, 9448425 - 9448324
Alignment:
135 gtgtttaagcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttctt-gggattgctatgttcgttttctgcttct 233  Q
    |||||||||||| |||| ||||||||||| ||| |||||||  ||| |||||||||||| ||||| ||||| |||| ||   ||||||||||||||||||    
9448425 gtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatg-actgttcgttttctgcttct 9448327  T
234 gct 236  Q
    |||    
9448326 gct 9448324  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 41985726 - 41985638
Alignment:
148 atgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg-attgctatgttcgttttctgcttctgct 236  Q
    |||| ||||||||||| ||| | |||||||| | |||||||||||||||||| |||||||| | ||  ||||||||||||||||||||||    
41985726 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg-atgttcgttttctgcttctgct 41985638  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 9695629 - 9695694
Alignment:
143 gcttaatgaaaaggagaagaagtggctgaagttggcaaatttaggggatagagttttcttcttggg 208  Q
    |||| |||| ||||||||||||||| | |||||| | |||||||||||||| ||||| || |||||    
9695629 gcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttggg 9695694  T

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